PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692602.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NAC
Protein Properties Length: 324aa    MW: 36456.2 Da    PI: 8.7325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1837.2e-57231501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke++++
  XP_020692602.1  23 LPPGFRFHPTDEELITYYLTHKITKANFTA-RAIAEVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGMRTNRATNSGYWKTTGKDKEIYDS 116
                     79*************************999.89***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++el g+kktLvfykgrap+gekt+Wvmheyrl
  XP_020692602.1 117 rSSELAGMKKTLVFYKGRAPRGEKTNWVMHEYRL 150
                     67788***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MQNQNNRKEG GEMDGAEAEE EKLPPGFRFH PTDEELITYY LTHKITKANF TARAIAEVDL  60
NKCEPWDLPG KAKMGEKEWY FFSLRDRKYP TGMRTNRATN SGYWKTTGKD KEIYDSRSSE  120
LAGMKKTLVF YKGRAPRGEK TNWVMHEYRL QPKSSFKGNL MVDEWVVCRV ILKSNSSSKK  180
CSSTSQSHRL ISPCSLNIIG PPILPTFFGS HNLAELLRYP TGRPPSSLNF QTINTQFDHS  240
TASFPQPPSS LGRLNLNLGG QQLLRAMNTP LNTTEGVLLP QPFMGNIAEC ESGYGSGSNI  300
VGAASRIQNL EESCMDLDGY WPTY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-87NAC family protein