PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692485.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 411aa MW: 45687.6 Da PI: 9.3341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692485.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_020692485.2 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	12.2	0.00057	134	155	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ XP_020692485.2 134 ACARCTKAYAVHSDYKAHLKTC 155 6*******************98 PP
3	zf-C2H2	11.1	0.0013	163	181	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_020692485.2 163 DCGRVFSRVESFIEHQDTC 181 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MFVSTSPVPP AATSSPAPPN AISATKRKRR PAGTPDPEAE VVSLSPRTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRESGS ETRKRVFVCP EPSCLHHDPS HALGDLVGIK 120 KHFRRKHSAH KQWACARCTK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT 180 CNAGRARPAP PACVSRSASS QSPSSDQTIF IPPPALLPTA SMWQALRPPK TAGAASFLQL 240 DHYTPSSSSH ILRRRPNIEL QLLPAEPGIP SSTPSPSSDD TRATKLELTI GNSKALDEKV 300 MADEARQEAK RQMELAEQEF ANAKRIRQQA QLELNKAFAL RDRAAKKIHS ILLQITCLSC 360 KQQFYSKATA SPMLFADDYS LTASYISSVV TEGEGDEENH DHDEREPRRS S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MFVSTSPVPP AATSSPAPPN AISATKRKRR PAGTPDPEAE VVSLSPRTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRESGS ETRKRVFVCP EPSCLHHDPS HALGDLVGIK  120
KHFRRKHSAH KQWACARCTK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT  180
CNAGRARPAP PACVSRSASS QSPSSDQTIF IPPPALLPTA SMWQALRPPK TAGAASFLQL  240
DHYTPSSSSH ILRRRPNIEL QLLPAEPGIP SSTPSPSSDD TRATKLELTI GNSKALDEKV  300
MADEARQEAK RQMELAEQEF ANAKRIRQQA QLELNKAFAL RDRAAKKIHS ILLQITCLSC  360
KQQFYSKATA SPMLFADDYS LTASYISSVV TEGEGDEENH DHDEREPRRS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-134	C2H2 family protein