PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020692232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 21026.1 Da PI: 4.68 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.6 | 3.3e-18 | 46 | 91 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ie r v fskRr+g++KKAeELS+L +a++ ++ fs+ gkly XP_020692232.1 46 LIEKAEARMVCFSKRRKGLFKKAEELSILSGAKIGILTFSQAGKLY 91 6899999**************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MRFKNFYLCF SFSPEFCPLY DFPISVCKKV FIFMAGKGRK KLDNKLIEKA EARMVCFSKR 60 RKGLFKKAEE LSILSGAKIG ILTFSQAGKL YCSDAEIMNS LLCSQVDIPQ EKEIEVDWES 120 AFAEDMTADA HFYSQFDSYP EKDVEEDALN SASVEAMVEE LYCSNTIADS LLRREFEISR 180 EKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 3e-14 | MIKC_MADS family protein |