PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692028.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 204aa MW: 23559.2 Da PI: 10.4608

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692028.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	136.5	7.4e-43	105	192	8	95
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ++i+++tdfknh++Plarikki+kad+dv+mi+aeaP++l++ace+fi+elt r+w hae+nkrrtl+k+diaa++t+t+++dfl + XP_020692028.2 105 REIQQTTDFKNHSIPLARIKKIMKADKDVRMIAAEAPIVLTRACEMFIFELTRRAWAHAEQNKRRTLQKNDIAAVLTKTNMYDFLAES 192 5799*********************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MVRLSGGGPA RLQRWSDEVP ALVRRSSVKK KPFRPFPFSK SFMLIYELKN VVNLCNYVPD 60 MDRQGHEFQA PKGFGANVPY QDFYRHQQQQ QQPQHLQMVL ANLYREIQQT TDFKNHSIPL 120 ARIKKIMKAD KDVRMIAAEA PIVLTRACEM FIFELTRRAW AHAEQNKRRT LQKNDIAAVL 180 TKTNMYDFLA ESMKDIGGPS STTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-45	NF-YC family protein