PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020691987.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30078.2 Da    PI: 6.6678
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020691987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18114168256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_020691987.1 114 RKKLRLSKEQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 168
                     788899***********************************************98 PP
2HD-ZIP_I/II128.52.7e-41114203191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_020691987.1 114 RKKLRLSKEQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 203
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MVVEKEDLGL SLSLSSSDAL CPLQSNLMPP ATLPTEQRLM LMGGIDVNRA PMEEWEVEDD  60
AGGSSPNSSV SNTSAGGKRG FGVAGGFVVG GEVVEGEQEC SRGGSDEEDG EGARKKLRLS  120
KEQSAVLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK  180
RCCENLTEEN RRLQKEVQEL RALKLSPHFY MHMTPPTTLT MCPSCERVTP PPPAVTGEKR  240
LIARPINAAA GVAPHWASLP LRPSFLDAPP QRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-62HD-ZIP family protein