PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020691764.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 419aa    MW: 45644.6 Da    PI: 7.6781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020691764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12326125
                    --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                    +++e+Cr+f+r G C+yGdrCkF H
  XP_020691764.1  3 PRREPCRNFQR-GSCQYGDRCKFLH 26
                    689********.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MIPRREPCRN FQRGSCQYGD RCKFLHLTQP QTRSNPFGFG SQSSSQFSRA SQQPKPNTFG  60
FGVQDTTQLS GVNNFVARNQ NPSKLFENKW IRPTATTNST SSQETDTQKQ AAVHECTDPE  120
SCKRQIIEDL KNEAPLWKLT CYGHWKYLPC DIVGDISYEE LRANAYEDAK RGLPLQSIVE  180
RERNLWNSKV AEFDNLLRSP YVIRSSGPTA VNQFSISSNT LTVSPLSNKP PTFSSFSQLG  240
TSASVAPFMS SGSLISGTPS NTVFTQPSFP KIASQISGGS EMKFGASGTV GGQLPMQQFG  300
SSPGPSNSGR TNGTFVGEPR LQQFGSSPGP SKSNITNGFM AMGTEQAPLR SIPQFFSSSS  360
NQSSGSLDGP KAVQSAPNQA AAGDKQDIGA DDTIWLKEWD IGEIPEEEPP ERVCLNINY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-74C3H family protein