PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691388.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 570aa MW: 61972.6 Da PI: 6.744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.3e-30	253	312	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+a+d +++++tYeg+Hnh+ XP_020691388.1 253 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDMSILITTYEGNHNHP 312 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MEAVKKRPLA AKEPRNEVDG GGEADQERFI KVSPARTGER SSTNTASRPS SNSKDSPTIS 60 QEDQIQSTKA EIGEVKEENE RLKNLLSQIV KDYQSLQMHF FDIVKQEQPN LVTKPTDELT 120 AIKTHEAEET ELVSLRLGSN SVTTDHKKQL EEKLINTSSK SKENGHIEEG LTLGLDCKFE 180 GYTNKNNSEC KEVASNPSSD NSIDEMKEEE AVEPCPPNKM LKNLRTGDDE VLQQTHVKKA 240 RVSVRVRCQT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPACPVRKQ VQRCADDMSI 300 LITTYEGNHN HPLPMSATAM ASTTSAAASM LMTGSSTTHS SGIPDAFPSS ASPIITGVNS 360 GLHNLNFSLS NNTRTTPFYL PNTTISPSPS YSTITLDLTA PPSSTAQTSQ FNRFSSSSSS 420 SSSFSISMPS SWSSRSGYMS CAAHDQSYKP NYPHDSFYQS YMQNPTSMAS MNQNFFTDSI 480 AKAITSDPSF QSALQAAITT YVGASGSQSG QVLHHAQSYA GNEYSTASGL FTTSVPSSSS 540 AQQGNLMAMS SSKSTASASP VDHISWENMK

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MEAVKKRPLA AKEPRNEVDG GGEADQERFI KVSPARTGER SSTNTASRPS SNSKDSPTIS  60
QEDQIQSTKA EIGEVKEENE RLKNLLSQIV KDYQSLQMHF FDIVKQEQPN LVTKPTDELT  120
AIKTHEAEET ELVSLRLGSN SVTTDHKKQL EEKLINTSSK SKENGHIEEG LTLGLDCKFE  180
GYTNKNNSEC KEVASNPSSD NSIDEMKEEE AVEPCPPNKM LKNLRTGDDE VLQQTHVKKA  240
RVSVRVRCQT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPACPVRKQ VQRCADDMSI  300
LITTYEGNHN HPLPMSATAM ASTTSAAASM LMTGSSTTHS SGIPDAFPSS ASPIITGVNS  360
GLHNLNFSLS NNTRTTPFYL PNTTISPSPS YSTITLDLTA PPSSTAQTSQ FNRFSSSSSS  420
SSSFSISMPS SWSSRSGYMS CAAHDQSYKP NYPHDSFYQS YMQNPTSMAS MNQNFFTDSI  480
AKAITSDPSF QSALQAAITT YVGASGSQSG QVLHHAQSYA GNEYSTASGL FTTSVPSSSS  540
AQQGNLMAMS SSKSTASASP VDHISWENMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-70	WRKY family protein