PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020691257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22409.5 Da PI: 4.6116 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7.5e-18 | 14 | 59 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e k r v fskRr+g++KKA ELS+L +a++ i+fs+ +kly+ XP_020691257.1 14 VEKKESRLVCFSKRRTGLFKKARELSTLSGAKIGAIVFSPADKLYT 59 688999***************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MVGRGRQKTE LKLVEKKESR LVCFSKRRTG LFKKARELST LSGAKIGAIV FSPADKLYTM 60 EAPTLDSLLG CLKENESDST TKSEFVDVTN GKEAPFWWDI PQVEAMSYEE LLQFQRALLD 120 YSERKFGKLE NFKERLLQGK QQESDERILL NPPTFYGDDS TDPNLKMDTL ASIFDPTLSF 180 DEQWLQCVDD WLMEA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-17 | M-type_MADS family protein |