PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020690375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C2H2 | ||||||||
Protein Properties | Length: 486aa MW: 50787.7 Da PI: 8.8209 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_020690375.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00096 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C k + +s+ k H +t+ XP_020690375.1 144 WKCDKCLKKYAVQSDWKAHAKTC 166 58******************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence |
MPVEFEGSSV MTMSNSASGE TSVSSGHLAA AASLLPPPKK KRNLPGMPDP DAEVIALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEVKKRVYV CPEPSCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCL KKYAVQSDWK AHAKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA RTQTNAVAVA AEKESKLAVT APANLQEKQM APPPPPSDQK 240 EPENAAGILQ YLPQPPLAPV SMSMNCSNSS CTTTSCGSSS LFASTVATQR TSFSDLIGSM 300 SRPEVEPPSL CLSSNGPSSL FPPAPDRRQF PALQPSAHMS ATALLQKAAQ MGAAASGSSF 360 LRGFGLAAST SPLAAGGGGE AQWPEPASMS AGLGLGLPYD SGCAAAGLPD MMMGSAALFG 420 SKPAATLDFL GLGPSGGANA GGLSAFINSI GGGGLEAYSS GRSSSPVKTW DGGGGGDVKA 480 NGRAIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-109 | C2H2 family protein |