PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020690326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 217aa MW: 23465.3 Da PI: 4.7449 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.6 | 1.2e-55 | 32 | 136 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q +e+a dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+k+diaaa+trtdifdfl XP_020690326.1 32 QLHMFWTYQrqeMEQAGDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWIHAEENKRRTLQKNDIAAAITRTDIFDFL 126 799****99889*********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivpr+++k XP_020690326.1 127 VDIVPREDIK 136 ******9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MEQNQQAGSS SAQGYPQPQT SFHQLLQQQH QQLHMFWTYQ RQEMEQAGDF KNHQLPLARI 60 KKIMKADEDV RMISAEAPIL FAKACELFIL ELTIRSWIHA EENKRRTLQK NDIAAAITRT 120 DIFDFLVDIV PREDIKEVVA AAPLGGEGAA AAGVPYYYST MGATGMYVGQ PPGMGWWGEE 180 DGSGGFGGGG GGGGVEVVQG YGVAGDQPTA PAPPPGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 4e-69 | NF-YC family protein |