PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690073.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 455aa    MW: 50507.9 Da    PI: 6.1482
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.51.7e-139504491373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+l +a+a+L+++s lasp+gd+mqR+a+yfteALa+rl+rs+++ly+al+p +++   ss ++aa++lf++++P+l++s+
  XP_020690073.1  50 LIHLLLNCANHVAAGNLDQANAFLEHISLLASPEGDTMQRIASYFTEALARRLLRSWPGLYRALNPVAAD---SSATAAARRLFVDLCPFLRLSF 141
                     689*****************************************************************98...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l+ NqaIlea+ege++vHi+D++ s ++QW+aLlq LasRpegpp+lR+T+vg+    +ke   +t++ L+k Ae+l++pf+fn+ v+++l++l+
  XP_020690073.1 142 LVSNQAILEAMEGEKMVHIVDLGGSDPAQWLALLQGLASRPEGPPHLRVTAVGE----HKELHLHTASVLSKEAEKLDIPFQFNA-VVSKLDSLN 231
                     ******************************************************....8888889********************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................desvsles..erdevLklvkslsPkvvvvveq 244
                     +e+Lrvk+gEala+n+vlqlh+ll                                                 + +++L  ++slsPk++vv+eq
  XP_020690073.1 232 VESLRVKTGEALAINSVLQLHSLLasddiaaarklfpfksagtlgelldkdqgsdsssspfnlT------PsaKMETFLASLWSLSPKIMVVTEQ 320
                     *****************************************************99886554222......2335678****************** PP

            GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                     e++hn++++ erf+eal++y+alfd+le++lpr+s er +vE++l+g+ei+n+ aceg er+erhe+le+W +rle+aGF+ +pls++ + qa++
  XP_020690073.1 321 ESNHNGSTLNERFVEALNFYAALFDCLESTLPRQSLERLSVEKKLFGEEIKNIMACEGLERKERHEKLERWMMRLEMAGFGRMPLSYYGMLQARR 415
                     *********************************************************************************************** PP

            GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +l+ ++ dgyrv+ee+g+++++W+dr+L+svSaW
  XP_020690073.1 416 MLQGFGCDGYRVKEENGCFLFCWQDRALFSVSAW 449
                     ********************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MLMSGVAEEV SSSATSSPLL SFMSISPTAL GSPYSPWLRE LKSDERGLFL IHLLLNCANH  60
VAAGNLDQAN AFLEHISLLA SPEGDTMQRI ASYFTEALAR RLLRSWPGLY RALNPVAADS  120
SATAAARRLF VDLCPFLRLS FLVSNQAILE AMEGEKMVHI VDLGGSDPAQ WLALLQGLAS  180
RPEGPPHLRV TAVGEHKELH LHTASVLSKE AEKLDIPFQF NAVVSKLDSL NVESLRVKTG  240
EALAINSVLQ LHSLLASDDI AAARKLFPFK SAGTLGELLD KDQGSDSSSS PFNLTPSAKM  300
ETFLASLWSL SPKIMVVTEQ ESNHNGSTLN ERFVEALNFY AALFDCLEST LPRQSLERLS  360
VEKKLFGEEI KNIMACEGLE RKERHEKLER WMMRLEMAGF GRMPLSYYGM LQARRMLQGF  420
GCDGYRVKEE NGCFLFCWQD RALFSVSAWN FRRVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-175GRAS family protein