PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689904.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 300aa MW: 34140.8 Da PI: 6.4538

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.2	1.2e-07	248	281	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + XP_020689904.1 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281 469*****************************87 PP
2	ELK	22.6	2.5e-08	202	223	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ XP_020689904.1 202 ELKLELKQGFRSRIEDVREEIL 223 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MMQGDPHQDL GMHISTAAAV GECSSSVPPS AAAEEEHRRL LKAEISVHPF LEQLLSAHVG 60 CLRVATPIDH LPLIDAQLSQ SHHLLRSYAS LHRPLLSPQE KLDLDNFLYS LLLCSFKEQL 120 QQHVRVHAVE AVMACREIEQ SLHELTGITL DEGTGATMSD DEDDLQLDCS LDPAMDGHDL 180 MGFGPLLPSE TERSLMERVR QELKLELKQG FRSRIEDVRE EILRKRRAGK LPGDTTSVLK 240 QWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHNNAQSA TSCLKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	300	RKRNWHNNAQSATSCLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-142	TALE family protein