PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689708.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 442aa    MW: 49724.6 Da    PI: 6.7566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.92.1e-90594381374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A a + +d++ a + L +l  + s +gdp+qR+aayf  A+ a l   +s ly++l+ps+t+     ee++a++ ++ +sP+l+f+h
  XP_020689708.1  59 LIRLLLLSASAADLHDFSTAVESLLHLYPQLSLSGDPIQRVAAYFSDAILANLIAPSSPLYSSLSPSPTP----HEEFSAFTSLYLASPYLQFAH 149
                     57899999****************************************99999999*************8....7899999************** PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI +a+e e       +H+iDfd+s+G+QWp+L+q+La+++ +++p +lRiTg+g+    s+ el+et+ rL+ f + + ++ fef+   
  XP_020689708.1 150 FTANQAIIDAFEAEehwngGSLHVIDFDVSYGFQWPSLIQSLADKAkKDKPfKLRITGFGR----SEAELKETEARLSGFSKGCrNLYFEFEG-- 238
                     *************977777788*********************988644445*********....9***************986479999999.. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleak 274
                      k++e  ++++L++ ++ +++Vn+v++lh l        s   ++L+l++sl+P ++++ve+e   ++++s+sFl rf+e+l+y++a+fdsl+  
  XP_020689708.1 239 -KNMEINSFKDLNLWENSTVVVNSVFNLHMLK-------S---STLQLIQSLNPSLLILVEKEgrrTETTSKSFLSRFMESLQYFAAMFDSLDDC 322
                     .89**************************997.......3...69******************555566888*********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerre....rhetlekWrerleeaGFkpvplsekaakqaklllr.........kvk.sdgyrveee. 354
                     lp+ s+er  +E+ +lgrei+n+v ++++e ++    +  tl++W+e++e++GF+ v +s++ ++qaklll+         +++ + g+r+ e+ 
  XP_020689708.1 323 LPAGSKERLRIEKNYLGREIRNAVDMKQEEDEKevliKYGTLATWKEAMERSGFEGVMMSSRSVSQAKLLLKikshcstmeEHGgGAGFRISERd 417
                     ************************999888544123346799****************************9633333222245556679998764 PP

            GRAS 355 sgslv.lgWkdrpLvsvSaWr 374
                     +g ++ lgW+dr L++++aWr
  XP_020689708.1 418 DGRAIsLGWHDRYLITATAWR 438
                     566667**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MKGEVADDLL NLSLSIGQTK KRKRTDQNLA IAAVLHARNR MLHQTTPILL DHNIDGLHLI  60
RLLLLSASAA DLHDFSTAVE SLLHLYPQLS LSGDPIQRVA AYFSDAILAN LIAPSSPLYS  120
SLSPSPTPHE EFSAFTSLYL ASPYLQFAHF TANQAIIDAF EAEEHWNGGS LHVIDFDVSY  180
GFQWPSLIQS LADKAKKDKP FKLRITGFGR SEAELKETEA RLSGFSKGCR NLYFEFEGKN  240
MEINSFKDLN LWENSTVVVN SVFNLHMLKS STLQLIQSLN PSLLILVEKE GRRTETTSKS  300
FLSRFMESLQ YFAAMFDSLD DCLPAGSKER LRIEKNYLGR EIRNAVDMKQ EEDEKEVLIK  360
YGTLATWKEA MERSGFEGVM MSSRSVSQAK LLLKIKSHCS TMEEHGGGAG FRISERDDGR  420
AISLGWHDRY LITATAWRCN SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025KKRKRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-47GRAS family protein