PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689555.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 612aa MW: 66682.6 Da PI: 6.9473

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.5e-32	235	292	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C++kk++ers+ d++++ei+Y+g+H+h+k XP_020689555.1 235 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCQMKKQLERSH-DGHITEIIYKGRHDHPK 292 7**************************************.*************85 PP
2	WRKY	106.2	1.7e-33	411	469	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_020689555.1 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERASHDPKAVITTYEGKHNHD 469 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MSEMSISGAG DHVASSIPPE ISTTSAGARY KMMSPGRLPI TRSPCLTIPP GFSPGALLES 60 PVLLTNMKAE PSPTTGTFAM PLILNNGGLA ALGSPKDSSK GCVSEDGSSP YFEFRPHIRL 120 SSRPGLSSLA PLGSLGLNSK QQEFVEKNQC LCDTNGSSSS QVVKTECIAQ SSPESTWSAT 180 ASGSPVEVFT LKANGFCEDA SNELQLTKDL DCRIQASQSD QNGSNPLNAV EKSSEDGYNW 240 RKYGQKHVKG SEFPRSYYKC THPNCQMKKQ LERSHDGHIT EIIYKGRHDH PKPQASRRSA 300 VGGVSTGQEE EKEDGLSCFA NFEEKFSNAH CHSSHVNPNC NSELSPVSVS DDEVEVGGGQ 360 SGLGGDDAAD DDPESKRSRK MEVATIDANS IAKNNREPRV VVQTVSEVDI LDDGYRWRKY 420 GQKVVKGNPN PRSYYKCTNP GCSVRKHVER ASHDPKAVIT TYEGKHNHDV PAAKTTNNNN 480 RESSPPLITD ANIPRTYITH QYSQPEENNA INLHLGVGVG SNHNNLLNEK QHLSGLERIP 540 SHHHHHHHHQ YISSDCNNVM IQLNPVSKLY GSSNNVVFGS RDNKGEGFSF STQMNNSSSH 600 YYPRADNLVM GP

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MSEMSISGAG DHVASSIPPE ISTTSAGARY KMMSPGRLPI TRSPCLTIPP GFSPGALLES  60
PVLLTNMKAE PSPTTGTFAM PLILNNGGLA ALGSPKDSSK GCVSEDGSSP YFEFRPHIRL  120
SSRPGLSSLA PLGSLGLNSK QQEFVEKNQC LCDTNGSSSS QVVKTECIAQ SSPESTWSAT  180
ASGSPVEVFT LKANGFCEDA SNELQLTKDL DCRIQASQSD QNGSNPLNAV EKSSEDGYNW  240
RKYGQKHVKG SEFPRSYYKC THPNCQMKKQ LERSHDGHIT EIIYKGRHDH PKPQASRRSA  300
VGGVSTGQEE EKEDGLSCFA NFEEKFSNAH CHSSHVNPNC NSELSPVSVS DDEVEVGGGQ  360
SGLGGDDAAD DDPESKRSRK MEVATIDANS IAKNNREPRV VVQTVSEVDI LDDGYRWRKY  420
GQKVVKGNPN PRSYYKCTNP GCSVRKHVER ASHDPKAVIT TYEGKHNHDV PAAKTTNNNN  480
RESSPPLITD ANIPRTYITH QYSQPEENNA INLHLGVGVG SNHNNLLNEK QHLSGLERIP  540
SHHHHHHHHQ YISSDCNNVM IQLNPVSKLY GSSNNVVFGS RDNKGEGFSF STQMNNSSSH  600
YYPRADNLVM GP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	1e-123	WRKY family protein