PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020689511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36767.1 Da PI: 6.8482 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++++G +W+++++ g+ R++k+c++rw +yl XP_020689511.1 14 RGLWSPEEDEKLLKHIAEYGHTSWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_020689511.1 67 RGKFSQEEEDIIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNT 110 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence |
MGKQSYLHKQ KLRRGLWSPE EDEKLLKHIA EYGHTSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGKF SQEEEDIIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNT CIKKKLRKTG 120 IDPNTHKPFS EIEGTEDDKI SSGSGSLKQT ELESDLTLMQ GIEDSASKSN GYFSLSKLSC 180 STSTTTLSVS SNPLLLLHNQ NNRGLGLNPE LSCSSIASAT TFVSSSIFYN SMDSNSSSSK 240 SSSFWFDGLS SWPDLTTERG NKYLLTGDSE EMERFQYLQG KFLAPSLPHY QSQPLHAGDL 300 QVESHFELES LNLCFQNHQP ELPQLQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-79 | MYB family protein |