PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020689455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28626.5 Da PI: 9.289 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.6 | 2.8e-17 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r t+ kRr+g+ KK eELS+LCd+++++ii++++ XP_020689455.1 11 IANDSARRATLKKRRKGLVKKVEELSTLCDVKACLIIYAPS 51 89************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MARKKVKLEW IANDSARRAT LKKRRKGLVK KVEELSTLCD VKACLIIYAP SDAQPEVWPS 60 PHEANKVLAK LRRLPEMEQS KKMMNQEGFM RHRIGKLQEQ IRKQERENRE VETMLIMYKG 120 LMGKMNLQSL EMRSLTSLAW HIELKLKEVK RRLEHLPLEM VAAKADIKEE LPPMAEIIMK 180 EVAVAAAEPT PETKEKLVFD EAMEDLQRQD WFRDIMNPQE EIMNNVPFYE HGSPAWLDSY 240 YPKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLEWIANDSARRATLKKRR |
2 | 22 | 26 | KKRRK |
3 | 146 | 152 | LKEVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-45 | M-type_MADS family protein |