PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689388.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 264aa MW: 29693.3 Da PI: 6.0335

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61.2	1.9e-19	99	161	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 Dg++WrKYGqK +++s+fprsYY+Ct++ gC+++k ++++++ + + ++ Y +H+++ XP_020689388.1 99 DGHQWRKYGQKRIHNSDFPRSYYKCTHNkdqGCQATKTIQQKEDkvpNSPIYKVSYCMHHTCK 161 9************************99999*****998853334678999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MEETPYNHSS TAIDNLSQGF EGLTQLRALF LASSPAKPTD KTLAIGLLDK ALRCITAALS 60 DLQPISPTVA VEDRKNDTDH KKRKRVQSWT IMTSVPHFDG HQWRKYGQKR IHNSDFPRSY 120 YKCTHNKDQG CQATKTIQQK EDKVPNSPIY KVSYCMHHTC KPIETQENPF VMDSSAIMNS 180 TSSTTASSSY SSHELSISSF QAPSSDQPTV FPLQLEESTE QVFPMESMLL SSETRGDLAV 240 LGLDWEWQDE LITLGEFGDL IVRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	109	KKRKRVQSWTIMTSVPHFDGHQWRKYGQK
2	82	110	KKRKRVQSWTIMTSVPHFDGHQWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-18	WRKY family protein