PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689071.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 288aa    MW: 30473 Da    PI: 7.3231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_020689071.1 119 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 163
                      6*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVAEAWSWEE EKAFENAVAI YCETCSDWLE KIASAVPGKT LEEVKAHHEI LVEDVASIEA  60
GRVPLPNYAS SSAAVAAAAN AEDSTDVGEH GKKGGASHGD SAKKGKGSLF DLERRKGIAW  120
TEEEHRLFLL GLEKYGKGDW RSISRNFVIS RTPTQVASHA QKYFIRQNSM NKDRRRSSIH  180
DITRVNDGDA ASPQGPISGQ GNSAAVSAGN ASRQSSHTPS APGISIYGAT IGQPVGAPPL  240
MPTIGTPVAG PHVAYGLRPP MVPGVVVSGA PVSFSPMAYQ ISNASSQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-79MYB family protein