PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688878.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 313aa MW: 36068.4 Da PI: 8.8935

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688878.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r n++ H+ XP_020688878.2 161 FSCSVCHKSFNRYNNMQMHM 180 89*****************9 PP
2	zf-C2H2	12.6	0.00041	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C ksF + + ++H +++ XP_020688878.2 245 FMCRKCRKSFAVRGDWRTHEKNC 267 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MQALSWRVFP SRFTSPLKPD TCGAPSTSFK KIMGLGKYSM EEEALSLSII HPSPFFQWLN 60 PLPSKPENME CLPLLSRLDE AKKSIKEEKK ENSSEREEIL PAVALSIGLP CFERVFDEEE 120 KVDQKEEEND FLEQGENSLV SESSRFWIPT PAQILVGAVQ FSCSVCHKSF NRYNNMQMHM 180 WGHGSEYRKG PESLKGTQPL TMLKLPCYCC VHGCKNNIIH PRSKPLKDFR TLQTHYKRKH 240 GVKPFMCRKC RKSFAVRGDW RTHEKNCGKL WFCSCGSDFK HKRSLNDHIR SFGNDHVHYI 300 PCRNSINGKN LHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-96	C2H2 family protein