PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688438.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 727aa MW: 80328.4 Da PI: 5.4216

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	118	140	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G C Gd+C+F Hgp XP_020688438.1 118 VPCYYFQK-GACLKGDKCPFVHGP 140 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MESGGGRSDP RPLTREEEAV KRNTDCVYFL ASPLTCKKGS ECEYRHSEGA RINPRDCKFW 60 FSGNCLNPKC LFRHPPLDVP FGNPVATSGS NMAPSLAPTP MQLPMASLPA YNLSRNNVPC 120 YYFQKGACLK GDKCPFVHGP QPAGNSVTKQ TAKASVPVTA QLDTTRKDAW KLKEYDNQQN 180 FPKASKNAGK QVTGASSSVE SSIALENAKV HRSSSTSLLR PSSFHVQSDG NHSNEHEAGE 240 ILGEPSGVVG TKSKRPLNQQ IQSSRYKNDM GVEVIREFSP GFDVLVNNVV KVADYLHDKD 300 GFRSGSIQGG RNMSHGDGYG QQHQCDPEST ASEFRHYGKV QHGIDGDQHG NFSVSERIKE 360 KPILPVRRSA AHKLRSPDGM DETDLRYRLM KQRRLNSSLS ATISDSESKP YGRHEQKMQD 420 RHPPNSYRDQ RLLPPESTIS SRLRGRITLS KPSSPEIASD LQGGGGRGRQ RGNLSPVRTS 480 SLQRRLGERL SRRPIEDFTS NARNIGSQQK SRDSVDPLDF AGPRSLAELK GAKPDVSSEG 540 QSSKNVKSTS SLEHNGMKSL KRNREVRPDN DAISGVSNDR KAIGAIEVGS SASEAAPVPE 600 LRSQDAFEAS LEWTKVITNL EDPAAATMVE EEGEIEEEVV HIPADVEQIT YEKQAAEDET 660 EARDAAEEDE LDYTDQRDGE YDYETIDGGD YKTEDYENMD PMNLDDEEED EDDDEDDFAK 720 KIGLIFS

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MESGGGRSDP RPLTREEEAV KRNTDCVYFL ASPLTCKKGS ECEYRHSEGA RINPRDCKFW  60
FSGNCLNPKC LFRHPPLDVP FGNPVATSGS NMAPSLAPTP MQLPMASLPA YNLSRNNVPC  120
YYFQKGACLK GDKCPFVHGP QPAGNSVTKQ TAKASVPVTA QLDTTRKDAW KLKEYDNQQN  180
FPKASKNAGK QVTGASSSVE SSIALENAKV HRSSSTSLLR PSSFHVQSDG NHSNEHEAGE  240
ILGEPSGVVG TKSKRPLNQQ IQSSRYKNDM GVEVIREFSP GFDVLVNNVV KVADYLHDKD  300
GFRSGSIQGG RNMSHGDGYG QQHQCDPEST ASEFRHYGKV QHGIDGDQHG NFSVSERIKE  360
KPILPVRRSA AHKLRSPDGM DETDLRYRLM KQRRLNSSLS ATISDSESKP YGRHEQKMQD  420
RHPPNSYRDQ RLLPPESTIS SRLRGRITLS KPSSPEIASD LQGGGGRGRQ RGNLSPVRTS  480
SLQRRLGERL SRRPIEDFTS NARNIGSQQK SRDSVDPLDF AGPRSLAELK GAKPDVSSEG  540
QSSKNVKSTS SLEHNGMKSL KRNREVRPDN DAISGVSNDR KAIGAIEVGS SASEAAPVPE  600
LRSQDAFEAS LEWTKVITNL EDPAAATMVE EEGEIEEEVV HIPADVEQIT YEKQAAEDET  660
EARDAAEEDE LDYTDQRDGE YDYETIDGGD YKTEDYENMD PMNLDDEEED EDDDEDDFAK  720
KIGLIFS