PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688386.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 512aa MW: 56768.8 Da PI: 4.6974

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.3	9.5e-14	61	134	2	76
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 Wt qevl+L+ ++e+ ++ + ++W+ +s+ +++ + rs++qCk kwe l +y ki ++e + se+s XP_020688386.1 61 WTVQEVLVLLSEIVAIDEAWLKELSSYQRWKMISDSCMAMNVVRSSNQCKRKWEMLLDDYNKIMKWEPQS-SEDS 134 ********99999999999999******************************************95.5554 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MQEAQPVVQA LAAAHCNEDT TSHQSPSKRK IRVHSQPKHD NSSSQTPRSS RYTRSQAAPD 60 WTVQEVLVLL SEIVAIDEAW LKELSSYQRW KMISDSCMAM NVVRSSNQCK RKWEMLLDDY 120 NKIMKWEPQS SEDSYWLLPE DRRKDYGLPV SFQKEVFDAM DAVIQVQQQQ SDSNNSDPEL 180 IISVHKFETS KMNADSETSV LYLPSVHLEE ELVTTSKILE VEASTLKSPD KTFVLAGLHS 240 TSASVSIGDE ITPSKIPEVQ ELTASSKISE ERPVVEELNI TSKNLQIRTE VEELIATSKR 300 PDVKELLTTS KSSEEGLEVV EPNTTSKNLG ERPEVQDLIT TSKSLELEDL ITASKSPEVD 360 ELITTSKSSK KALVIAVSGE EELITTSKSS EAEELITTSK SSDKASVITV FDQVELVPKS 420 KSTKKARLIT GKLQENAEHV CAILRSELQD GASHSPLPID SLKPSLAETE FARRQADELI 480 KALGELTNSL DELCDHISKR GCAGIVTVDS KA

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MQEAQPVVQA LAAAHCNEDT TSHQSPSKRK IRVHSQPKHD NSSSQTPRSS RYTRSQAAPD  60
WTVQEVLVLL SEIVAIDEAW LKELSSYQRW KMISDSCMAM NVVRSSNQCK RKWEMLLDDY  120
NKIMKWEPQS SEDSYWLLPE DRRKDYGLPV SFQKEVFDAM DAVIQVQQQQ SDSNNSDPEL  180
IISVHKFETS KMNADSETSV LYLPSVHLEE ELVTTSKILE VEASTLKSPD KTFVLAGLHS  240
TSASVSIGDE ITPSKIPEVQ ELTASSKISE ERPVVEELNI TSKNLQIRTE VEELIATSKR  300
PDVKELLTTS KSSEEGLEVV EPNTTSKNLG ERPEVQDLIT TSKSLELEDL ITASKSPEVD  360
ELITTSKSSK KALVIAVSGE EELITTSKSS EAEELITTSK SSDKASVITV FDQVELVPKS  420
KSTKKARLIT GKLQENAEHV CAILRSELQD GASHSPLPID SLKPSLAETE FARRQADELI  480
KALGELTNSL DELCDHISKR GCAGIVTVDS KA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-33	Trihelix family protein