PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688245.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 269aa MW: 30556.7 Da PI: 7.937

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688245.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++W eEde+l++++k+ G g+W+++ + g+ R +k+c++rw+++l XP_020688245.2 25 KLSWRSEEDEILIKYIKRNGLGNWNLVGKNSGLSRDGKSCRLRWLNHL 72 689*******************************************97 PP
2	Myb_DNA-binding	29.1	2.3e-09	80	119	2	43
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +++++ E + + ++ lG++ W+ Iar ++ gRt++++k++ XP_020688245.2 80 LPFSEKEKLVIFSEHAVLGNK-WSDIARQLP-GRTDNEIKNF 119 58999999999999*****.*****.******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MISSSWNAKL RLMEARRKGK GISRKLSWRS EEDEILIKYI KRNGLGNWNL VGKNSGLSRD 60 GKSCRLRWLN HLQPGLKKNL PFSEKEKLVI FSEHAVLGNK WSDIARQLPG RTDNEIKNFM 120 NIHKKKCLKN GVISIYPPEI SMRYTDNGTT EFPKIASSGD HDSVVHQLVE LMDLPSIQNT 180 EKDVIDILFS PYLHNPHSSF ELLPQPQLAA AHQSSNTSFN VLSSEQCSNL SIADLLYSDY 240 SMDGNLDCWL QFISSSGWEE TSSHFSLDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	1e-39	MYB family protein