PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688203.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 267aa MW: 29183.6 Da PI: 6.3138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.4e-09	11	56	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ eE++ + +a + + + +W++Ia ++ +tl+++ +++q XP_020688203.1 11 SWSWEEEKAFENALAVYAEDgdvRWEKIAVDVP-MKTLEEIMHHYQL 56 5***************99*********.9********96 PP
2	Myb_DNA-binding	44.8	3e-14	116	160	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qk+ XP_020688203.1 116 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKF 160 6******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MAMDEASGSY SWSWEEEKAF ENALAVYAED GDVRWEKIAV DVPMKTLEEI MHHYQLLEED 60 VGAIESGLIP LPCYPSSKTT IESANDGVCS KKSGQGNGHE CSKGTRLEQE RRKGIAWTEE 120 EHRLFLLGLE KYGKGDWRSI SRNFVVTRTP TQVASHAQKF FIRLNSGNKD RRRSSIHDIT 180 TVGHGDAPAT PQMNATMSPA GNSGNQSSDQ SAEPPSVGVY GTAIGLPVIS GVVTTIGTPV 240 TLPVPVVSED PVNFPLRSRS TRKSAHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-85	MYB family protein