PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688053.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GATA

Protein Properties

Length: 523aa MW: 59404.2 Da PI: 7.8047

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688053.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.9	2.2e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_020688053.2 7 CRHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MGKHGPCRHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA REPINWEEPK 60 FAKVKIIYSK PKVEKLQKRK KMIGVVENKY EISLSETLEE DASSGPAISY SESCAHFGNT 120 DANDWTGSAQ SNAWDSLVPS KKRSVIRPKH SSVEKLTKDL YSIWHEQQSS NISGTSDDDL 180 LFEDENPIGS VEIGHGGVLL RHPWSKAVEE ESEASSLPLY DKLVCDASRP SSLPINIETK 240 RTNFSSASMN KLKISTAHLA QENATRVRFS PDILNMLQSR DSLLWSAKLE GVVSFEVFMK 300 HLTNDEQQYL MKYLPSIDTA EPTDSLKIMF SSYQFLESFS HFKQLLQEGL FDLTFLQMSV 360 EECSTLKRLV LLNLTQSRWV QLYKQLKEKK QKQVTGAKID ERGKDFYDHS NVTPTKRRCE 420 SENQHLLESK VTTMRSPKQV HRYISTSPPF RKSRKSREEP TQAIYDAEDI VDNEGTCFSP 480 RSLFTSPPYR SSMLQSTDES SDHDLLINVH VVVVVVYSVE GSK

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MGKHGPCRHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA REPINWEEPK  60
FAKVKIIYSK PKVEKLQKRK KMIGVVENKY EISLSETLEE DASSGPAISY SESCAHFGNT  120
DANDWTGSAQ SNAWDSLVPS KKRSVIRPKH SSVEKLTKDL YSIWHEQQSS NISGTSDDDL  180
LFEDENPIGS VEIGHGGVLL RHPWSKAVEE ESEASSLPLY DKLVCDASRP SSLPINIETK  240
RTNFSSASMN KLKISTAHLA QENATRVRFS PDILNMLQSR DSLLWSAKLE GVVSFEVFMK  300
HLTNDEQQYL MKYLPSIDTA EPTDSLKIMF SSYQFLESFS HFKQLLQEGL FDLTFLQMSV  360
EECSTLKRLV LLNLTQSRWV QLYKQLKEKK QKQVTGAKID ERGKDFYDHS NVTPTKRRCE  420
SENQHLLESK VTTMRSPKQV HRYISTSPPF RKSRKSREEP TQAIYDAEDI VDNEGTCFSP  480
RSLFTSPPYR SSMLQSTDES SDHDLLINVH VVVVVVYSVE GSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-97	GATA family protein