PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687877.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 1627aa MW: 178260 Da PI: 6.4935

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	957	997	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE +++a++++G++ + ++++++ +R++ qck ++ k XP_020687877.1 957 WTDEEKYMFIRAFNMYGKD-FVKVSHYVR-TRSRDQCKIFYSK 997 ***************99.*****.******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1627 aa Download sequence
MPSPLPGELK EALVKDRKQD RGASSDAVGG AGGVGGGSSS TVRGREPYHG QRDVSRASPR 60 RDLTGHYRHD GGYQQLYSEE SSGHGCTPSR SGDKFLPEEE IFRLSSGRCG GKSTGSGGRE 120 SRGSSRRSPC FDSGGDHPRQ HHVPPITAQR SVAVPITHAS SSSSSPTPLK NLPDKNDGGV 180 IEGVGTGQKY DRDHSLGSIA WKPLKWTRPS SLPLSKTVRS ESEEANVEIS VPQVKESPAG 240 SPVTSQLRLD DKAPSKKARL GWGQGLAKYE KQKVEGSVDV SSNNGSAQST NSAKYIFSDS 300 SPKIPVLTGS MSPVTPSSVT CSSSPAGTDE KLSIKGLNAE TDRAQCSDSF GLGPHDSSED 360 IFIKLDQLDA NSINKLALLL SDLMQPEDAC SGDSSFTRNS TINKLLLLKK DISKELEKTE 420 CEIDLFENRL KSINGDGQRN DFQECTYTSP KDGVAHPSVK SVDASKSLLK LSSDSCAVDS 480 SAVLEGHEAI HTHLSEVHTA AVKDTSDDLQ LMRLEQEYPN SFTLMQPAVL LPDDICSHEQ 540 ASCMDYRAEK ADDSLLAFIM ASNRAAAKRA SEEFDQAMPP GFHQFNVSES YLLHCRKNYM 600 HVKGRLAMNK RILKFKERIL ALKFRALHHL WREDLGLLTM RKHRPKSSKR FEVNSRSSHS 660 ALQKHRSSIR SRFALPAGNL TMVPTTEILD FTSKLLSDSQ MRLYRDNLKM PAQIIDENDR 720 RYSRFNSNNG LIENPPALEK ERVMVNPWIQ DEKEVFLEML ATFGKDFKKI SSFLSHKTTA 780 DCIEFYYKNH KSESFTEVKK HLKRRKKLQS RHCNTYLVTS EARFKRETNA TSLELLGEAS 840 MIAAESNCNK RNSLKQTGKS GYHDTKVFRR SYGSLEKANS EISGSDREVA AADVLAGICG 900 ALSSDAMSSC VTSSIDPSER LHFASIDCSL TPEAAHVIDE EDTCSEESSD ELESADWTDE 960 EKYMFIRAFN MYGKDFVKVS HYVRTRSRDQ CKIFYSKARK CLSLDVIQPG STNGVTPLSD 1020 VNGGRSDTDD ACAAEIDSAI CSTQSCSKMD VDFTQSLLET CSDAAQQADA DRSCEQCEIV 1080 VSIPDEVEGK FDDKVSVRND DKLVIEQGNL EFGKDQGEIC SSGLRRKEHE QLHGAVEFFA 1140 DTQTNNENTD EILSPGKPAV KLHCEIEFNS LTSAEAPQKA NCGSSDAKES NKEVDSNQFV 1200 GLPDPAVENK AHFKIKEIAN VGDSFIFGPN SHSSGNSCND VEQKNDGCPS LLSSNFQQQV 1260 PLELLCSMQK RPQTEVVIPF DEADNKTSIA ILNLQNGGDK SRQEPVGRDL SQNLLKTSFP 1320 NQMDPSLHVA SSCFIQSFTQ NLKESKIDKK LIDNNSILDM PKMADCSFVP GLNNDKCVCA 1380 EVSSSSPGIA LTSRLEHKSE RRLAEAKSET HRTKNLQGDH IAESADQSQR VGDLKLFGQI 1440 LTHQSLQKSS ESIMPLSPRH NSNATTNSSS CWKDAAIFAP PRPAKNGLLH HQGDLPQRSY 1500 GFWDGNRVQT GLSSLPEPAI VLANYQASLA GMPFVAGSTI DYEQQAQMQS ASTPELQKRN 1560 GFDLLSGFQQ QGRIMHLGVN IVAGGGIMVG GNGVSDPVAA LQMHYSGRRS KILAGELDSL 1620 MGDTGGR

Sequence ? help Back to Top

Protein Sequence Length: 1627 aa Download sequence

MPSPLPGELK EALVKDRKQD RGASSDAVGG AGGVGGGSSS TVRGREPYHG QRDVSRASPR  60
RDLTGHYRHD GGYQQLYSEE SSGHGCTPSR SGDKFLPEEE IFRLSSGRCG GKSTGSGGRE  120
SRGSSRRSPC FDSGGDHPRQ HHVPPITAQR SVAVPITHAS SSSSSPTPLK NLPDKNDGGV  180
IEGVGTGQKY DRDHSLGSIA WKPLKWTRPS SLPLSKTVRS ESEEANVEIS VPQVKESPAG  240
SPVTSQLRLD DKAPSKKARL GWGQGLAKYE KQKVEGSVDV SSNNGSAQST NSAKYIFSDS  300
SPKIPVLTGS MSPVTPSSVT CSSSPAGTDE KLSIKGLNAE TDRAQCSDSF GLGPHDSSED  360
IFIKLDQLDA NSINKLALLL SDLMQPEDAC SGDSSFTRNS TINKLLLLKK DISKELEKTE  420
CEIDLFENRL KSINGDGQRN DFQECTYTSP KDGVAHPSVK SVDASKSLLK LSSDSCAVDS  480
SAVLEGHEAI HTHLSEVHTA AVKDTSDDLQ LMRLEQEYPN SFTLMQPAVL LPDDICSHEQ  540
ASCMDYRAEK ADDSLLAFIM ASNRAAAKRA SEEFDQAMPP GFHQFNVSES YLLHCRKNYM  600
HVKGRLAMNK RILKFKERIL ALKFRALHHL WREDLGLLTM RKHRPKSSKR FEVNSRSSHS  660
ALQKHRSSIR SRFALPAGNL TMVPTTEILD FTSKLLSDSQ MRLYRDNLKM PAQIIDENDR  720
RYSRFNSNNG LIENPPALEK ERVMVNPWIQ DEKEVFLEML ATFGKDFKKI SSFLSHKTTA  780
DCIEFYYKNH KSESFTEVKK HLKRRKKLQS RHCNTYLVTS EARFKRETNA TSLELLGEAS  840
MIAAESNCNK RNSLKQTGKS GYHDTKVFRR SYGSLEKANS EISGSDREVA AADVLAGICG  900
ALSSDAMSSC VTSSIDPSER LHFASIDCSL TPEAAHVIDE EDTCSEESSD ELESADWTDE  960
EKYMFIRAFN MYGKDFVKVS HYVRTRSRDQ CKIFYSKARK CLSLDVIQPG STNGVTPLSD  1020
VNGGRSDTDD ACAAEIDSAI CSTQSCSKMD VDFTQSLLET CSDAAQQADA DRSCEQCEIV  1080
VSIPDEVEGK FDDKVSVRND DKLVIEQGNL EFGKDQGEIC SSGLRRKEHE QLHGAVEFFA  1140
DTQTNNENTD EILSPGKPAV KLHCEIEFNS LTSAEAPQKA NCGSSDAKES NKEVDSNQFV  1200
GLPDPAVENK AHFKIKEIAN VGDSFIFGPN SHSSGNSCND VEQKNDGCPS LLSSNFQQQV  1260
PLELLCSMQK RPQTEVVIPF DEADNKTSIA ILNLQNGGDK SRQEPVGRDL SQNLLKTSFP  1320
NQMDPSLHVA SSCFIQSFTQ NLKESKIDKK LIDNNSILDM PKMADCSFVP GLNNDKCVCA  1380
EVSSSSPGIA LTSRLEHKSE RRLAEAKSET HRTKNLQGDH IAESADQSQR VGDLKLFGQI  1440
LTHQSLQKSS ESIMPLSPRH NSNATTNSSS CWKDAAIFAP PRPAKNGLLH HQGDLPQRSY  1500
GFWDGNRVQT GLSSLPEPAI VLANYQASLA GMPFVAGSTI DYEQQAQMQS ASTPELQKRN  1560
GFDLLSGFQQ QGRIMHLGVN IVAGGGIMVG GNGVSDPVAA LQMHYSGRRS KILAGELDSL  1620
MGDTGGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	800	806	KHLKRRK
2	802	808	LKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-107	MYB family protein