PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687748.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 969aa MW: 110425 Da PI: 9.7658

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5.3e-13	525	569	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_020687748.1 525 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 569 6***************************.**********975 PP
2	Myb_DNA-binding	44.4	4e-14	577	618	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw XP_020687748.1 577 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERW 618 8****************************.********* PP
3	Myb_DNA-binding	62.5	8.6e-20	615	660	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_020687748.1 615 RERWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 660 78****************99.*****.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT 180 GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED 240 GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL 300 MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY 360 KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD 420 CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK 480 LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET 540 FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK 600 KIAQFIPGRT QSQCRERWTE EEDAKFLAAI AEHGHRWSKV AACIPGRTDN QCRRRWKVLL 660 PHEVPMLKAA QQLKRTVLIS NFVGREGERP AIGPNDFTPV VCLPAPDTEN NVGVVKKRSR 720 ERSNPGSNKN ASSRNNNLRK ARNKFRSSTE EKSADNSIII SMEDAFANLS VVSVETSDFT 780 ATGFPKRKRE RSFRNKQSRK SRDKSERDGE ENSKADGLVN SAKSAHFYLP PVPALPSTAD 840 ENENIKRKRK RTSRNKQSQK SRDKSERDDE ENSKADGLVN SAKSAHFYLP PVPALPSTAD 900 ENENIKRKRK RTSRISQPKR LKSHKRKRID DIFASSELSE DALMELPLVH VIKLISRKSR 960 AMHETSKKT

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence

MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG  60
DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF  120
ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT  180
GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED  240
GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL  300
MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY  360
KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD  420
CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK  480
LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET  540
FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK  600
KIAQFIPGRT QSQCRERWTE EEDAKFLAAI AEHGHRWSKV AACIPGRTDN QCRRRWKVLL  660
PHEVPMLKAA QQLKRTVLIS NFVGREGERP AIGPNDFTPV VCLPAPDTEN NVGVVKKRSR  720
ERSNPGSNKN ASSRNNNLRK ARNKFRSSTE EKSADNSIII SMEDAFANLS VVSVETSDFT  780
ATGFPKRKRE RSFRNKQSRK SRDKSERDGE ENSKADGLVN SAKSAHFYLP PVPALPSTAD  840
ENENIKRKRK RTSRNKQSQK SRDKSERDDE ENSKADGLVN SAKSAHFYLP PVPALPSTAD  900
ENENIKRKRK RTSRISQPKR LKSHKRKRID DIFASSELSE DALMELPLVH VIKLISRKSR  960
AMHETSKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	906	928	KRKRKRTSRISQPKRLKSHKRKR
2	907	929	KRKRKRTSRISQPKRLKSHKRKR
3	908	930	KRKRKRTSRISQPKRLKSHKRKR
4	908	922	KRKRTSRISQPKRLK
5	909	931	KRKRKRTSRISQPKRLKSHKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-153	MYB family protein