PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687746.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 979aa MW: 111651 Da PI: 9.7206

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.3e-13	522	566	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_020687746.1 522 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 566 6***************************.**********975 PP
2	Myb_DNA-binding	48.5	2e-15	574	618	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw++ XP_020687746.1 574 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERWLNC 618 8****************************.*********996 PP
3	Myb_DNA-binding	60.6	3.4e-19	627	670	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_020687746.1 627 RWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 670 9***************99.*****.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGATNAD FSPETSGTFS ADTSEQDPHN ISLTAAMNEE HQEQSNTGLI 180 QPGADAISVF PKFVKSFTDT PKTLLDNVPE PPYTSLRKRV MNEEHPEEIR SNFNQEDGLY 240 SLSVRQFMSS RFPKSVQNFV HALKKNRSCQ RFIREKMMEI EAKIEVNRKL KERIKCLMDF 300 HTACKRKVGR SLCQKRDPRI RLISFRQQKS SSTVKENSKK SSALYFAPAE NAQMSNYKMV 360 MGRFPVSLRK RQWSNAEKDK LFDGVKQQCQ EMLFLNSMNI GSDFDGLNDS IITSTFDCAR 420 HLLTPEILRS FIRLVNWDRL ASMYLPRRSG SSCESRWLNH EDPMINCNPW TSLEDKKLLF 480 TVQDRGLYNW IDMASTLGTN RTPFQCLARY QRSLNPHILN REWTREEDSK LCTAVETFGD 540 NSWQIVASHL DGRTSNQCSV RWRNTLLPER KRVGRWSVDE DKRLKVSVIL FGAKNWKKIA 600 QFIPGRTQSQ CRERWLNCLD PSLNLERWTE EEDAKFLAAI AEHGHRWSKV AACIPGRTDN 660 QCRRRWKVLL PHEVPMLKAA QQLKRTVLIS NFVGREGERP AIGPNDFTPV VCLPAPDTEN 720 NVGVVKKRSR ERSNPGSNKN ASSRNNNLRK ARNKFRSSTE EKSADNSIII SMEDAFANLS 780 VVSVETSDFT ATGFPKRKRE RSFRNKQSRK SRDKSERDGE ENSKADGLVN SAKSAHFYLP 840 PVPALPSTAD ENENIKRKRK RTSRNKQSQK SRDKSERDDE ENSKADGLVN SAKSAHFYLP 900 PVPALPSTAD ENENIKRKRK RTSRISQPKR LKSHKRKRID DIFASSELSE DALMELPLVH 960 VIKLISRKSR AMHETSKKT

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence

MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG  60
DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF  120
ETLRAIQRRF AHYGGATNAD FSPETSGTFS ADTSEQDPHN ISLTAAMNEE HQEQSNTGLI  180
QPGADAISVF PKFVKSFTDT PKTLLDNVPE PPYTSLRKRV MNEEHPEEIR SNFNQEDGLY  240
SLSVRQFMSS RFPKSVQNFV HALKKNRSCQ RFIREKMMEI EAKIEVNRKL KERIKCLMDF  300
HTACKRKVGR SLCQKRDPRI RLISFRQQKS SSTVKENSKK SSALYFAPAE NAQMSNYKMV  360
MGRFPVSLRK RQWSNAEKDK LFDGVKQQCQ EMLFLNSMNI GSDFDGLNDS IITSTFDCAR  420
HLLTPEILRS FIRLVNWDRL ASMYLPRRSG SSCESRWLNH EDPMINCNPW TSLEDKKLLF  480
TVQDRGLYNW IDMASTLGTN RTPFQCLARY QRSLNPHILN REWTREEDSK LCTAVETFGD  540
NSWQIVASHL DGRTSNQCSV RWRNTLLPER KRVGRWSVDE DKRLKVSVIL FGAKNWKKIA  600
QFIPGRTQSQ CRERWLNCLD PSLNLERWTE EEDAKFLAAI AEHGHRWSKV AACIPGRTDN  660
QCRRRWKVLL PHEVPMLKAA QQLKRTVLIS NFVGREGERP AIGPNDFTPV VCLPAPDTEN  720
NVGVVKKRSR ERSNPGSNKN ASSRNNNLRK ARNKFRSSTE EKSADNSIII SMEDAFANLS  780
VVSVETSDFT ATGFPKRKRE RSFRNKQSRK SRDKSERDGE ENSKADGLVN SAKSAHFYLP  840
PVPALPSTAD ENENIKRKRK RTSRNKQSQK SRDKSERDDE ENSKADGLVN SAKSAHFYLP  900
PVPALPSTAD ENENIKRKRK RTSRISQPKR LKSHKRKRID DIFASSELSE DALMELPLVH  960
VIKLISRKSR AMHETSKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	916	938	KRKRKRTSRISQPKRLKSHKRKR
2	917	939	KRKRKRTSRISQPKRLKSHKRKR
3	918	940	KRKRKRTSRISQPKRLKSHKRKR
4	918	932	KRKRTSRISQPKRLK
5	919	941	KRKRKRTSRISQPKRLKSHKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-165	MYB family protein