PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687745.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 981aa MW: 111893 Da PI: 9.6704

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.3e-13	525	569	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_020687745.1 525 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 569 6***************************.**********975 PP
2	Myb_DNA-binding	48.5	2e-15	577	621	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw++ XP_020687745.1 577 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERWLNC 621 8****************************.*********996 PP
3	Myb_DNA-binding	60.6	3.4e-19	630	673	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_020687745.1 630 RWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 673 9***************99.*****.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT 180 GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED 240 GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL 300 MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY 360 KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD 420 CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK 480 LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET 540 FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK 600 KIAQFIPGRT QSQCRERWLN CLDPSLNLER WTEEEDAKFL AAIAEHGHRW SKVAACIPGR 660 TDNQCRRRWK VLLPHEVPML KAAQQLKRTV LISNFVGREG ERPAIGPNDF TPVVCLPAPD 720 TENNVGVVKK RSRERSNPGS NKNASRNNNL RKARNKFRSS TEEKSADNSI IISMEDAFAN 780 LSVVSVETSD FTATGFPKRK RERSFRNKQS RKSRDKSERD GEENSKADGL VNSAKSAHFY 840 LPPVPALPST ADENENIKRK RKRTSRNKQS QKSRDKSERD DEENSKADGL VNSAKSAHFY 900 LPPVPALPST ADENENIKRK RKRTSRISQP KRLKSHKRKR IDDIFASSEL SEDALMELPL 960 VHVIKLISRK SRAMHETSKK T

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence

MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG  60
DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF  120
ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT  180
GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED  240
GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL  300
MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY  360
KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD  420
CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK  480
LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET  540
FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK  600
KIAQFIPGRT QSQCRERWLN CLDPSLNLER WTEEEDAKFL AAIAEHGHRW SKVAACIPGR  660
TDNQCRRRWK VLLPHEVPML KAAQQLKRTV LISNFVGREG ERPAIGPNDF TPVVCLPAPD  720
TENNVGVVKK RSRERSNPGS NKNASRNNNL RKARNKFRSS TEEKSADNSI IISMEDAFAN  780
LSVVSVETSD FTATGFPKRK RERSFRNKQS RKSRDKSERD GEENSKADGL VNSAKSAHFY  840
LPPVPALPST ADENENIKRK RKRTSRNKQS QKSRDKSERD DEENSKADGL VNSAKSAHFY  900
LPPVPALPST ADENENIKRK RKRTSRISQP KRLKSHKRKR IDDIFASSEL SEDALMELPL  960
VHVIKLISRK SRAMHETSKK T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	918	940	KRKRKRTSRISQPKRLKSHKRKR
2	919	941	KRKRKRTSRISQPKRLKSHKRKR
3	920	942	KRKRKRTSRISQPKRLKSHKRKR
4	920	934	KRKRTSRISQPKRLK
5	921	943	KRKRKRTSRISQPKRLKSHKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-164	MYB family protein