PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687676.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 450aa    MW: 49440.3 Da    PI: 5.6759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.29.2e-88424332373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL +cA+a++s+d++laq+lL+ l+++a pdgd++qRl++ f++AL  r +r s++ l+ +++ s+ s  +   ++++l +f +++P+++f++
  XP_020687676.1  42 EQLLAHCAHAIDSHDATLAQQLLWVLHNIAPPDGDTNQRLTSAFLRALLLRASRsSCPALS-SINHSPPS--HLPLSATSLAAFIDLTPCHRFGF 133
                     799***************************************************4455555.55555544..36666667778************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl... 181
                      +aN+aI ea+++   +Hi+D++ ++G+Q p+L+++La+R+ e+pp lR+T  + p  +      +  l+e+g rL +fA++ ++ +efn++   
  XP_020687676.1 134 SAANSAIAEATDSFPILHIVDLSTTHGMQLPTLIETLAARRpESPPFLRVTIPSLPPDTspppaLEIPLQELGARLVNFARSRNLAMEFNIVqst 228
                     **************************************5554*********98877666788878899************************888 PP

            GRAS 182 ....vakrledleleeLrvkp.gEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          ++ +e l+l++L  +p  Eal++n++++lh ++         ++s+s   +r+ +L+++++l P++++vve++ad ++ + +er+  a++
  XP_020687676.1 229 padgFSSLIEHLRLQQLVAEPgAEALVINSHFMLHFTPdessappniSQSHSNIVPRTMFLNALRGLDPTILIVVEEDADFTACNVVERLRAAFN 323
                     87777778888999999999999***************666666655455555559*************************************** PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sg 356
                     y++  fd++++ lp+  e+r+ +E++ + ++i+n++a+eg er+er et +kW +r++ +GF+ v ++e+a+ + k+++ +++  g+ v+++ ++
  XP_020687676.1 324 YMWIPFDAVDSFLPKGGEQRRRYEEA-ICWKIENAIAQEGLERVERLETRSKWVQRMKGVGFRGVGFGEEAVGELKSMVDEHS-AGWGVKKDeEE 416
                     **************************.*******************************************************9.78888877145 PP

            GRAS 357 slvlgWkdrpLvsvSaW 373
                      lvl+Wk++ ++++SaW
  XP_020687676.1 417 ILVLTWKGHDVLFASAW 433
                     566************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MQFKETTNQP WPDFFPSSSS SSSSSKSHQL NNLSINSTAC MEQLLAHCAH AIDSHDATLA  60
QQLLWVLHNI APPDGDTNQR LTSAFLRALL LRASRSSCPA LSSINHSPPS HLPLSATSLA  120
AFIDLTPCHR FGFSAANSAI AEATDSFPIL HIVDLSTTHG MQLPTLIETL AARRPESPPF  180
LRVTIPSLPP DTSPPPALEI PLQELGARLV NFARSRNLAM EFNIVQSTPA DGFSSLIEHL  240
RLQQLVAEPG AEALVINSHF MLHFTPDESS APPNISQSHS NIVPRTMFLN ALRGLDPTIL  300
IVVEEDADFT ACNVVERLRA AFNYMWIPFD AVDSFLPKGG EQRRRYEEAI CWKIENAIAQ  360
EGLERVERLE TRSKWVQRMK GVGFRGVGFG EEAVGELKSM VDEHSAGWGV KKDEEEILVL  420
TWKGHDVLFA SAWMPAPPPP PLPAPAPLIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein