PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020687633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 196aa MW: 21874.3 Da PI: 5.9514 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4e-31 | 112 | 169 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v+++Yeg+Hnh XP_020687633.1 112 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSPGCEVKKRVERDRSDSSYVITIYEGTHNH 169 59******************************************************** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence |
MAALLEPAEM NSHFSSLQPA KLLHSSCEGS LAATGGGGGS GDVFDFAQID QSQFFDGSCL 60 TEVAGELETP TSRMMESSDL YEHEMEYEEL KRRKAEGGCR IGFRTKSEVE ILDDGFKWRK 120 YGKKAVKNSP NPRNYYRCSS PGCEVKKRVE RDRSDSSYVI TIYEGTHNHI SPDCKPYTTN 180 PPQLAIAPSH SWSQQF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 91 | 127 | KRRKAEGGCRIGFRTKSEVEILDDGFKWRKYGKKAVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-38 | WRKY family protein |