PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020687555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 1177aa MW: 132426 Da PI: 4.7518 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_020687555.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.5 | 2e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_020687555.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1177 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR RRKRKGIDYN AEIPFEKRPP PGFFDVSGEE KPAEQHKFPT 240 TIEELEGKRR VDIETQLRRQ DAARNKIQQR LDSPAAILQA NKLNDPAAVR KRSKLMLPPP 300 QISDQELEEI AKMGYASDLT SGNEELAEGS GATRALVADY SQTPRRGMTP LRTPQRTPAG 360 KVDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREMQTPNP LATPLSSPGP 420 AGLTPRIGMT PSRDGPGGTP KFTPFRDDLH INEDVEMQDS AKLELRRQEE MRRNLRSGLT 480 NLPLPKNEYQ IVMQPIPEEN EEIEEKIEED MSDKIAKDKA REQARMEALM KKRSKVLQRE 540 LPRPPAASLE LIKNLLVKGD EDKSSFVPPT PFEQADEMIN KELLSLLEHD NAKYPLNEKS 600 DKVKVKGVKR AENGKSSNSI PEIEEFDEAE LSEANSLIKE EMKFLRVAMG HENESFDDFV 660 KARDACQEDL MFFPARNTYG LASVAGSSEK LAALQNEFEI VKKKMDDEAK KATRLEQKIK 720 VLTHGYQMRG EKLWSQIEAT FKLTGTASIE LECFQALQKQ ERAAASYRID NLIDEVNKQK 780 QLERTLQDRY RDLLVEEERI QRMLEEHKAR LQAEEEMAAS IRAAEEEMAA RKRAEEETAA 840 SIRAAEEEMA ARKRAEEETA ASIRAAEEEM AARKRAEEET AASIRAAEDE MTARKPVEEE 900 MAASICAAED EMAASICAAE DEMAARKRAE EEMAASICAA EDEMAARNRA EDEMAASILA 960 AEDEMAARKL AEDEMAASIH AAEDKMTARK LAGEEMAARN HAAEDEMSAR KQADEEEIAA 1020 GDLMSEVEET VQNHAIDAEA GATKDASDAI NHIHKQLTPP SDEAPAEFEE PVEIPASNKN 1080 SVLNDDELQN PKAAEEATKH PTLNEKSTED NLSQNQSEIT NPDQNVEFIS ELSVDRLPNK 1140 QLEVEAVALS ESISDGEKKP EIDSDVKLPP VVSPNEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 205 | KRRELKAAGIDNRHRRRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | MYB family protein |