PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020687243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | Trihelix | ||||||||
Protein Properties | Length: 497aa MW: 54367.5 Da PI: 7.9121 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.3 | 3e-16 | 197 | 285 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++e+ +l+rg+l++ +We+v+ + +++ ++ +qCk+k +nl+kryk + ++ +++ + ++s++p+f+++e XP_020687243.1 197 EWSDSAIGCLLDAYTEKYIQLNRGNLRGRDWEDVATTVsercDKQKSGKTVEQCKNKVDNLKKRYKVECQRLSSG-NLAVSHWPWFKKME 285 5*******************************998877666588899999************************9.88999********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence |
MASCDDDFAL LGDEAQSHHH HPQQQQQASA TVAAGAVSFS SHRYIPKASV PLHSRSIHLN 60 TINSKKVPIG SVGQDDDHEG YGEAFAPTDV NPHSHCFADD DPGSNPFDSA QPPEDDDAEG 120 DNNPNNKSHP AASTSHLHHQ QQQQHHHASR AESKRRDRDE LSDGESPYGY NMGNKRSSRS 180 ALAAPTSSGD YRKDREEWSD SAIGCLLDAY TEKYIQLNRG NLRGRDWEDV ATTVSERCDK 240 QKSGKTVEQC KNKVDNLKKR YKVECQRLSS GNLAVSHWPW FKKMEQVVGS SSSSKIVPDE 300 DKAAALVDTN PAQRQMKRYP VTSPVSASLT GSFKLKSLSN PRWKRTVLKI SGSTLAGTGP 360 QNVDPKVLML IAREVSLASR VGVEVAIVVG GRNFFCGNSW VATTGTDRAT TYQIGMMASV 420 MNALLLQASF EKIGVETRVQ TAFMMQEVAE PYIRRRAIRH LEKGRIVIFG GIGVGTGNPL 480 FTTDTATALR ASESGLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 1e-136 | Trihelix family protein |