PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687171.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ZF-HD
Protein Properties Length: 264aa    MW: 28253.3 Da    PI: 7.0925
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.8e-3248103359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +vrY+eClkNhA+s+GghavDGCgEf+++ geegt++al+CaAC+CHRnFHR+++e+
  XP_020687171.1  48 GVRYRECLKNHAVSIGGHAVDGCGEFTAA-GEEGTIDALRCAACNCHRNFHRKDMES 103
                     79**************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MDFDEHDDGD EEMGIPTYNL GLSNSGRAKP GGVTDLPAGN FNRSAGSGVR YRECLKNHAV  60
SIGGHAVDGC GEFTAAGEEG TIDALRCAAC NCHRNFHRKD MESGGGTGGD RSGFHSPYSP  120
YYRMPVGYLQ YNQMGMAAAA GQHRPMGPLA LPSTSGGGQS REDPEDVGGG GGVGGLGASS  180
SSSGKKRFRT KFTPEQKNKM LAFAERIGWR IQKNDEAEVQ QFCEETSIKR HVFKVWMHNN  240
KHSIGKQAIA PSPPLPPPPE STDH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-59ZF-HD family protein