PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687165.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 701aa MW: 77632.1 Da PI: 7.919

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.8	2.3e-24	125	226	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +++ XP_020687165.1 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGKVWKFRHIYRGTPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RTE 215 89**************************996555555..8999*****************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_020687165.1 216 NGDLCVGIRRA 226 8999**997 PP
2	Auxin_resp	112.8	3.3e-37	293	376	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +d +rWp+S+Wr+L+ XP_020687165.1 293 AATFAARGQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISAVHVADLMRWPGSPWRLLQ 376 6778999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MKENNFITEE EAKKDSEKCL DAQLWHACAG GMVQMPSVNS KVYYFPQGHA EHAQSPVDFG 60 NSLRISPLIL CRVVSVKFMA DSVTDEVFAK IRMIPMRSNE PDYSEEDELV LGSNGSDLPE 120 KLESFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGKVWKFRHI 180 YRGTPRRHLL TTGWSNFVNE KKLVAGDSIV FLRTENGDLC VGIRRAKRGI GGGPEMSAGW 240 NQPTGTCMYG GFSVFLREDE SKFNRGMGNG GRINSGSSLR GRGKVKADSV IEAATFAARG 300 QPFEVVYYPR ASTPEFCVKA SAVRAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISAVH 360 VADLMRWPGS PWRLLQVSWD EPDLLQNVKR VSPWLVELVS NLPAIHLAPP FSPPRKKTRI 420 PQHPEFSLDV QLSTSPFPEN TLIPSSSPLC CLPDSSPAVG IQGPRHSQYG SNLPGLHFEK 480 LQSGLFHTGF LRLDRFTPSH RISTGLIVPN SADHEDVSCL LTIGNPSVCV KKDCNKECNA 540 MTPKFRLFGK PILTEQQLSL SPNNSSNMNS DKTTNLSNGS GSSIHQNGMG DNNSSSEGLP 600 WCRDRKLNEL GLEVGHCKLF LESEDVGQTL DLSSFGSYED LYRRLANMFG IKKSELNSRV 660 LYRDIAGVVK HTGDEPFADF MKGARRLTIF MDSSSDNIGK L

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MKENNFITEE EAKKDSEKCL DAQLWHACAG GMVQMPSVNS KVYYFPQGHA EHAQSPVDFG  60
NSLRISPLIL CRVVSVKFMA DSVTDEVFAK IRMIPMRSNE PDYSEEDELV LGSNGSDLPE  120
KLESFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGKVWKFRHI  180
YRGTPRRHLL TTGWSNFVNE KKLVAGDSIV FLRTENGDLC VGIRRAKRGI GGGPEMSAGW  240
NQPTGTCMYG GFSVFLREDE SKFNRGMGNG GRINSGSSLR GRGKVKADSV IEAATFAARG  300
QPFEVVYYPR ASTPEFCVKA SAVRAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISAVH  360
VADLMRWPGS PWRLLQVSWD EPDLLQNVKR VSPWLVELVS NLPAIHLAPP FSPPRKKTRI  420
PQHPEFSLDV QLSTSPFPEN TLIPSSSPLC CLPDSSPAVG IQGPRHSQYG SNLPGLHFEK  480
LQSGLFHTGF LRLDRFTPSH RISTGLIVPN SADHEDVSCL LTIGNPSVCV KKDCNKECNA  540
MTPKFRLFGK PILTEQQLSL SPNNSSNMNS DKTTNLSNGS GSSIHQNGMG DNNSSSEGLP  600
WCRDRKLNEL GLEVGHCKLF LESEDVGQTL DLSSFGSYED LYRRLANMFG IKKSELNSRV  660
LYRDIAGVVK HTGDEPFADF MKGARRLTIF MDSSSDNIGK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein