PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686971.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 376aa MW: 41290.9 Da PI: 9.4707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.7e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F r nL+ H r+H XP_020686971.1 56 YVCDICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	12.1	0.0006	141	162	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ XP_020686971.1 141 ACARCSKAYAVHSDYKAHLKTC 162 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MFRIATSQLP PEEFAPPSSA ENAVTHKRKR RPAGTPDPDA EVISLSPRTL LESERYVCDI 60 CNQGFQRDQN LQMHRRRHKV PWKLTVKSNL ASSGAAAAAK KRVFVCPEAT CLHHHPCHAL 120 GDLVGIKKHF RRKHSANRQW ACARCSKAYA VHSDYKAHLK TCGTRGHSCD CGRVFSRVET 180 FIEHQDSCTA TKTREPPPPP VAPPSNHSHS TSSPTTSDDD TIPDPPPPPP PLLPFILAPP 240 NHNKEALSLL PFLPHHPSIP VNTADLHLSI APPASPSQQA KTAKAAADKA REEALRDVHL 300 AERELVAARR VRQQAQAELE KACQLRTAAA RQIHSILLQI TCGDCRQRML RNSAPLAGGN 360 SFSGDDESSG HKSLRL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MFRIATSQLP PEEFAPPSSA ENAVTHKRKR RPAGTPDPDA EVISLSPRTL LESERYVCDI  60
CNQGFQRDQN LQMHRRRHKV PWKLTVKSNL ASSGAAAAAK KRVFVCPEAT CLHHHPCHAL  120
GDLVGIKKHF RRKHSANRQW ACARCSKAYA VHSDYKAHLK TCGTRGHSCD CGRVFSRVET  180
FIEHQDSCTA TKTREPPPPP VAPPSNHSHS TSSPTTSDDD TIPDPPPPPP PLLPFILAPP  240
NHNKEALSLL PFLPHHPSIP VNTADLHLSI APPASPSQQA KTAKAAADKA REEALRDVHL  300
AERELVAARR VRQQAQAELE KACQLRTAAA RQIHSILLQI TCGDCRQRML RNSAPLAGGN  360
SFSGDDESSG HKSLRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-100	C2H2 family protein