PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686563.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 286aa    MW: 32566.2 Da    PI: 8.2268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-182571148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEd+llv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
   XP_020686563.1 25 KGQWSLEEDKLLVKLVEQFGLRKWSHIAQMLN-GRIGKQCRERWHNHL 71
                     799*****************************.*************97 PP
2Myb_DNA-binding58.51.5e-1877119145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
   XP_020686563.1  77 KDTWSEEEDKILIQAHSEIGNK-WAEIAKRLP-GRTENSIKNHWN 119
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MNNKFMPNKR RTTNGIIHKK VNLIKGQWSL EEDKLLVKLV EQFGLRKWSH IAQMLNGRIG  60
KQCRERWHNH LRPNIKKDTW SEEEDKILIQ AHSEIGNKWA EIAKRLPGRT ENSIKNHWNA  120
TKRRQFARRR CRSSKHPKSG AGSLLQEYIK SISLLNPSPA PAAANTNESA ASTAEAAPPM  180
PMPMPLMSVS AWDDDFSDMA EELMMLDTKK MELMTDMCDV SYLLDHLGCG GESSRSSSNA  240
RDQMEECFSM SSEEKVKKEM DLVEMICDHH NNKSCYSSAC DDLLAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-56MYB family protein