PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020686494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20793.8 Da PI: 4.8244 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.7 | 1.5e-23 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie + nrqv fskRr+g++KKA+ELS+LC+aevav++fs tgk y + XP_020686494.1 21 LIEKEENRQVCFSKRRKGLFKKASELSTLCGAEVAVVVFSLTGKPYCF 68 699****************************************97765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MNPVEVKKRI CNGRKKIDIK LIEKEENRQV CFSKRRKGLF KKASELSTLC GAEVAVVVFS 60 LTGKPYCFGH PSVDHVLRRF LSNISGPSDT LSPASTNCSE LINDDQLVQK PFWWDVDLHS 120 MGDDELRLYE KFLLEQQTVV TEASEAAMEQ IDAVPHTNPE VGEADYFLWL LQEIKDLPDI 180 DPI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-22 | M-type_MADS family protein |