PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686419.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 425aa MW: 47658.9 Da PI: 8.9603

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	176	232	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+pr+YYrCt++ Cpvkk vers+ d+++ ei+Y+g+Hnh+k XP_020686419.1 176 DGYNWRKYGQKQVKGSEYPRGYYRCTHPFCPVKKMVERSK-DGEISEIVYRGDHNHPK 232 9*************************************.*************85 PP
2	WRKY	90.4	1.5e-28	369	425	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK+vkg+ +pr+YYrCt ++C+++k ver+++d +++tYeg+H+h XP_020686419.1 369 DDGYQWRKYGQKVVKGNSYPRNYYRCTNQNCSARKYVERASDDHGSFITTYEGDHKH 425 8*******************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MQDKNKNSCA NLRKSPEQLA GSSSASPSII SEIAFKPKAV RLKPVANLSS EIAFKCDASV 60 QAASMALDME SIDISKENSK TIILYRPIAQ VVPSSVLLKK LENHEEHKQT LLDVHFQPQE 120 LNQVNCSQST MSLHQSLTSS SNANNFLCSS NSSHESKKTK VKSQQITKNG DRNSLDGYNW 180 RKYGQKQVKG SEYPRGYYRC THPFCPVKKM VERSKDGEIS EIVYRGDHNH PKSQKKEQIS 240 SSRLREQTSV LDGNGGNFMD DRAFTDFLLE ENLLENKTEN CDVEDFLDTG INRKALYSDD 300 SDTVLHALSL SFGADLNGGK AAAFSTRDGY EKKSQKRKNG ENTNESSVAA HKTSTPKVVA 360 AVNHKHTTDD GYQWRKYGQK VVKGNSYPRN YYRCTNQNCS ARKYVERASD DHGSFITTYE 420 GDHKH

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MQDKNKNSCA NLRKSPEQLA GSSSASPSII SEIAFKPKAV RLKPVANLSS EIAFKCDASV  60
QAASMALDME SIDISKENSK TIILYRPIAQ VVPSSVLLKK LENHEEHKQT LLDVHFQPQE  120
LNQVNCSQST MSLHQSLTSS SNANNFLCSS NSSHESKKTK VKSQQITKNG DRNSLDGYNW  180
RKYGQKQVKG SEYPRGYYRC THPFCPVKKM VERSKDGEIS EIVYRGDHNH PKSQKKEQIS  240
SSRLREQTSV LDGNGGNFMD DRAFTDFLLE ENLLENKTEN CDVEDFLDTG INRKALYSDD  300
SDTVLHALSL SFGADLNGGK AAAFSTRDGY EKKSQKRKNG ENTNESSVAA HKTSTPKVVA  360
AVNHKHTTDD GYQWRKYGQK VVKGNSYPRN YYRCTNQNCS ARKYVERASD DHGSFITTYE  420
GDHKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.2	4e-59	WRKY family protein