PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020686365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 418aa MW: 47652.2 Da PI: 9.2311 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 358 | 379 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr+f++ C++ d+CkFaH+ XP_020686365.1 358 VSVCRDFLK-KACQR-DSCKFAHP 379 678******.*****.*******8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence |
MASDDSLHLS SLSPRRKRER SPSLSSSSGS DNAKASRRQR RRHDLSVEVC KEFIRRACRR 60 AEIACKFAHP PSTVTIERGK VIACADSLHN RCFRGRTCRY FHPPPHILES LLKSIGMEDT 120 KHLMRQRSPS QSPTYDGDNA ESSPRQRRLH DLSVEVCKDF IRSGCRRAEI DCKFAHPPSG 180 VAIERGKVIA CIDSLRGECI RGRTCPYYHP PAQIQESLLK AMGMEDTKNP MALQYLGSSV 240 KLPSYTQPGN DQEFIPVCRD FLKNACNRRS CKYAHPDSHA TGQLQHHGLS LLENGAIPNA 300 TVLYQDVVPV CKDFLKNACN RDHCKYFHLI PQSEVYLQQH ETFVKLHGSS LETEQKRVSV 360 CRDFLKKACQ RDSCKFAHPN SRTKVVDNQV EICHDFRRGL CHRTNCRFYH PHTRSAEK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | RRQRRR |