PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686258.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 542aa    MW: 58399.4 Da    PI: 6.5741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY901.9e-28224280259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vk+++ +rsYYrCt a+C +kkkver+  d++v+e++Y+g+H he
  XP_020686258.1 224 DDGYNWRKYGQKQVKSTDRSRSYYRCTNADCFAKKKVERCP-DGQVTEVIYRGQHSHE 280
                     8****************************************.***************8 PP
2WRKY99.81.7e-31396453259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK v+g+++prsYYrCt+ gCpv+k+ve+s+ d k ++itYeg+Hnh+
  XP_020686258.1 396 SDGYRWRKYGQKIVRGNPNPRSYYRCTHDGCPVRKHVEKSSYDAKSMVITYEGKHNHD 453
                     8********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MSTKEAKTDA SRKKPSGEVG GDFIRKETAV AVKLEESQPK SDREVDGSIL LPAPANETLA  60
GRKSSAASPI VAVPSTSAGD CRSFLQLLAG AMASPAASSR PPPLLAVPID APRVPVVAVP  120
CFLAPAALLE SHGITGQFSM SHQAVLATVT AQAQMQLQAG YPSPSGSLKN SVPHSMLPPM  180
TPSPLQQRLP LASTEAASSL ETEQTPSYDQ KSQSAFIVSK TSSDDGYNWR KYGQKQVKST  240
DRSRSYYRCT NADCFAKKKV ERCPDGQVTE VIYRGQHSHE QPHKTKLSKE RGHPSSGPFG  300
VTEGLDIPGI VTVESDPSTS KIDQNSSIDN PEQQLYCSSD CEGDGSNKAG EDPDDEPEPE  360
PKRRLSLITV TNPPPVFRTV KQPKVVMQTA VAGHVSDGYR WRKYGQKIVR GNPNPRSYYR  420
CTHDGCPVRK HVEKSSYDAK SMVITYEGKH NHDVPSLRYG LDPLPTALFI DSAPTAPAAE  480
TLNEHESKGD KIPSISNPPE IEKQLTGDKV LEFGDEKGLE SAQALLSMSC DPSSGEEEAP  540
IL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-65WRKY family protein