PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686257.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 557aa MW: 59995.1 Da PI: 6.6992

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90	2e-28	224	280	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vk+++ +rsYYrCt a+C +kkkver+ d++v+e++Y+g+H he XP_020686257.1 224 DDGYNWRKYGQKQVKSTDRSRSYYRCTNADCFAKKKVERCP-DGQVTEVIYRGQHSHE 280 8**************************************.*************8 PP
2	WRKY	99.7	1.7e-31	396	453	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK v+g+++prsYYrCt+ gCpv+k+ve+s+ d k ++itYeg+Hnh+ XP_020686257.1 396 SDGYRWRKYGQKIVRGNPNPRSYYRCTHDGCPVRKHVEKSSYDAKSMVITYEGKHNHD 453 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MSTKEAKTDA SRKKPSGEVG GDFIRKETAV AVKLEESQPK SDREVDGSIL LPAPANETLA 60 GRKSSAASPI VAVPSTSAGD CRSFLQLLAG AMASPAASSR PPPLLAVPID APRVPVVAVP 120 CFLAPAALLE SHGITGQFSM SHQAVLATVT AQAQMQLQAG YPSPSGSLKN SVPHSMLPPM 180 TPSPLQQRLP LASTEAASSL ETEQTPSYDQ KSQSAFIVSK TSSDDGYNWR KYGQKQVKST 240 DRSRSYYRCT NADCFAKKKV ERCPDGQVTE VIYRGQHSHE QPHKTKLSKE RGHPSSGPFG 300 VTEGLDIPGI VTVESDPSTS KIDQNSSIDN PEQQLYCSSD CEGDGSNKAG EDPDDEPEPE 360 PKRRLSLITV TNPPPVFRTV KQPKVVMQTA VAGHVSDGYR WRKYGQKIVR GNPNPRSYYR 420 CTHDGCPVRK HVEKSSYDAK SMVITYEGKH NHDVPSLRYG LDPLPTALFI DSAPTAPAAE 480 TLNEHESKGD KIPSISNPPE IEKQLTGDKV LEFGDEKGLE SAQALLSMSC DPSSGEEEGM 540 KSQLFSEKSA AVPVQNS

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MSTKEAKTDA SRKKPSGEVG GDFIRKETAV AVKLEESQPK SDREVDGSIL LPAPANETLA  60
GRKSSAASPI VAVPSTSAGD CRSFLQLLAG AMASPAASSR PPPLLAVPID APRVPVVAVP  120
CFLAPAALLE SHGITGQFSM SHQAVLATVT AQAQMQLQAG YPSPSGSLKN SVPHSMLPPM  180
TPSPLQQRLP LASTEAASSL ETEQTPSYDQ KSQSAFIVSK TSSDDGYNWR KYGQKQVKST  240
DRSRSYYRCT NADCFAKKKV ERCPDGQVTE VIYRGQHSHE QPHKTKLSKE RGHPSSGPFG  300
VTEGLDIPGI VTVESDPSTS KIDQNSSIDN PEQQLYCSSD CEGDGSNKAG EDPDDEPEPE  360
PKRRLSLITV TNPPPVFRTV KQPKVVMQTA VAGHVSDGYR WRKYGQKIVR GNPNPRSYYR  420
CTHDGCPVRK HVEKSSYDAK SMVITYEGKH NHDVPSLRYG LDPLPTALFI DSAPTAPAAE  480
TLNEHESKGD KIPSISNPPE IEKQLTGDKV LEFGDEKGLE SAQALLSMSC DPSSGEEEGM  540
KSQLFSEKSA AVPVQNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-65	WRKY family protein