PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686080.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 499aa MW: 58788.4 Da PI: 6.0128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2.1e-22	74	160	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk+++++ ++++ ++++fvCsk g ++ ++ + +++ +r+ trtgC a+++ + ++ g w+v+k+ ++HnH+l XP_020686080.1 74 AYRKYGYNLGFSVRKDHHSYWPNSRNLKSKDFVCSKAGLKKLSDLN-IQRKYRRSDTRTGCPAMIRFTVDEGGYWKVKKFIENHNHDL 160 59***************************************999.999999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MPMKMEIDLD LEEDAGFYEQ TIFSQISEEA DNLENVDVQE TSAHEAEHVE PVIQDEKFSL 60 SINFAFFQKE AYEAYRKYGY NLGFSVRKDH HSYWPNSRNL KSKDFVCSKA GLKKLSDLNI 120 QRKYRRSDTR TGCPAMIRFT VDEGGYWKVK KFIENHNHDL PRPEDRHLLR SCRNMCDEKA 180 SVLKAMTDTR IRTTDAFSFL ADEVGGVENI GFTRRDAYNF LQRIKRAKIE LGDTNTLIEL 240 FKERQLKDNM FSWDVQNDEF DRLLNFFWVD GIDKIDYDCF GDVVIFYTSY RLNKYNLVCA 300 PFVGVNKYWQ NILLWVAFLS EETIESFTWV FITFVRMMGD KQPKTIYTDQ DQAIAMAIEV 360 ALPQSRHRLC QWHIRKKAPS KVSCYNTNNK VKGLFNKCLS RCDSEEEFEN AWAELIIQGN 420 LQDHVWLQDL YRISNKWSIA FNKDCFSMDI ISTQRSESTN NVCHGISKPT SSIIDYFLGL 480 EKVMRNWRRN EQDEDYRCS

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MPMKMEIDLD LEEDAGFYEQ TIFSQISEEA DNLENVDVQE TSAHEAEHVE PVIQDEKFSL  60
SINFAFFQKE AYEAYRKYGY NLGFSVRKDH HSYWPNSRNL KSKDFVCSKA GLKKLSDLNI  120
QRKYRRSDTR TGCPAMIRFT VDEGGYWKVK KFIENHNHDL PRPEDRHLLR SCRNMCDEKA  180
SVLKAMTDTR IRTTDAFSFL ADEVGGVENI GFTRRDAYNF LQRIKRAKIE LGDTNTLIEL  240
FKERQLKDNM FSWDVQNDEF DRLLNFFWVD GIDKIDYDCF GDVVIFYTSY RLNKYNLVCA  300
PFVGVNKYWQ NILLWVAFLS EETIESFTWV FITFVRMMGD KQPKTIYTDQ DQAIAMAIEV  360
ALPQSRHRLC QWHIRKKAPS KVSCYNTNNK VKGLFNKCLS RCDSEEEFEN AWAELIIQGN  420
LQDHVWLQDL YRISNKWSIA FNKDCFSMDI ISTQRSESTN NVCHGISKPT SSIIDYFLGL  480
EKVMRNWRRN EQDEDYRCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-73	FAR1 family protein