PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685793.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 1065aa MW: 119237 Da PI: 5.2183

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.2	2.8e-18	71	209	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknr..atksgyWk 84 lp+G++F+P+deel+++ L++ +g ++++ + ++e ++ +v P+ Lp vk++ + yfF+++ + ++ + kr+++ + W+ XP_020685793.1 71 LPKGVKFDPSDEELLWHLLAEMGKGVAkrhpfINEFIFsLDEDaGLGHVLPQFLP-GVKQDGSASYFFHRKIEMHRsrNFKRQKKqdNSVEICWN 164 799**********99999876655444456333333344443899****.677888999*99887733233444412344677 PP NAM 85 atgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + gk++ v++ +g + g k++L +y + + ++ kt W+mh+y + XP_020685793.1 165 SIGKSNLVCV-DGIHQGSKEVLSLYMNtvTGGNPLKTPWLMHQYCI 209 ****9999.999*******6522555566*******75 PP

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence
MNFQNASGEP TSALGFGEKA VIKLEREARS GDLDLLPLSE RRRMLIYPDM PSKGLNVKRV 60 IPDFRKEWPS LPKGVKFDPS DEELLWHLLA EMGKGVAKRH PFINEFIFSL DEDAGLGHVL 120 PQFLPGVKQD GSASYFFHRK IEMHRSRNFK RQKKQDNSVE ICWNSIGKSN LVCVDGIHQG 180 SKEVLSLYMN TVTGGNPLKT PWLMHQYCIG INETEEDLVV SKIFYEISSN QDIQDSRTDS 240 VHGLVAAVVG VADSLQVAPE FHERLHADSV SADASSQAVE LGIGGETNIK VVDYLKSASC 300 QKPPIKYLEK AKTNLDKNSD GTLATDELAL LESACETAAE ISIFCTSAKS EIRDEDQECV 360 VEKRADDFQS NLGDCGNWIN NYNYNEVIDD TCDSNDTQVS MEKSCPKIVP EHDLQKNISD 420 KMFRTQGRFI PTKSREFNTT GIYSFAGHIS RERHETYSKC LDEAHVSPNS IPSAEHNITH 480 ENSINSLFIL GLPAYSLKGK PSKETEPIIS FENNSNNWVN ISAQSALPIK IEPKSFVDTE 540 IDIASEKFSS NRLNVSAPSV MIIKVKNEPF EEVEASNVLE KYVEKHSSFS QLSCPEEGAP 600 SCNLSHLTYV PKDPRIPSAE ILNTMISGLD KLLSETTGLM NHHHEEDDNV HDGLLMSNDN 660 SQVIGDTECF NQSSYAQINV HTGEPQSNSV STSSSLNVKS EPVESSLLSC SQIPPCNTRG 720 HVLLTFENKK ELCSDFQPDV LDHVPLKLRL GISVSEDDVN VKNGNISEEI APVTPACRSF 780 GSVNTKECLS SSRRKRKRKK IATDSVEKAM EEDAPGLLKV LLDRGIQVEE IKLYGDLEDN 840 DPLETSSSEG GFEELETVMT KLFSERSSLL RFASGRPVKG ARAVYCLAGL ISLIEQARYL 900 RFRQIPIDWG WCRPLQSFIF VFQTHNRIVL ERPEYGYATY FFELVDSLPI DWQIRRLVMA 960 MKLTNFSRTI LLENKPLIVG EDLSEGEALV LEAYGWARNT GFGTLLNYRD RVVHDRRNVI 1020 LSEWRAKIGK LLMNGYTGGR MVLANFPKKV VEYLGNLSSE IKMEL

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence

MNFQNASGEP TSALGFGEKA VIKLEREARS GDLDLLPLSE RRRMLIYPDM PSKGLNVKRV  60
IPDFRKEWPS LPKGVKFDPS DEELLWHLLA EMGKGVAKRH PFINEFIFSL DEDAGLGHVL  120
PQFLPGVKQD GSASYFFHRK IEMHRSRNFK RQKKQDNSVE ICWNSIGKSN LVCVDGIHQG  180
SKEVLSLYMN TVTGGNPLKT PWLMHQYCIG INETEEDLVV SKIFYEISSN QDIQDSRTDS  240
VHGLVAAVVG VADSLQVAPE FHERLHADSV SADASSQAVE LGIGGETNIK VVDYLKSASC  300
QKPPIKYLEK AKTNLDKNSD GTLATDELAL LESACETAAE ISIFCTSAKS EIRDEDQECV  360
VEKRADDFQS NLGDCGNWIN NYNYNEVIDD TCDSNDTQVS MEKSCPKIVP EHDLQKNISD  420
KMFRTQGRFI PTKSREFNTT GIYSFAGHIS RERHETYSKC LDEAHVSPNS IPSAEHNITH  480
ENSINSLFIL GLPAYSLKGK PSKETEPIIS FENNSNNWVN ISAQSALPIK IEPKSFVDTE  540
IDIASEKFSS NRLNVSAPSV MIIKVKNEPF EEVEASNVLE KYVEKHSSFS QLSCPEEGAP  600
SCNLSHLTYV PKDPRIPSAE ILNTMISGLD KLLSETTGLM NHHHEEDDNV HDGLLMSNDN  660
SQVIGDTECF NQSSYAQINV HTGEPQSNSV STSSSLNVKS EPVESSLLSC SQIPPCNTRG  720
HVLLTFENKK ELCSDFQPDV LDHVPLKLRL GISVSEDDVN VKNGNISEEI APVTPACRSF  780
GSVNTKECLS SSRRKRKRKK IATDSVEKAM EEDAPGLLKV LLDRGIQVEE IKLYGDLEDN  840
DPLETSSSEG GFEELETVMT KLFSERSSLL RFASGRPVKG ARAVYCLAGL ISLIEQARYL  900
RFRQIPIDWG WCRPLQSFIF VFQTHNRIVL ERPEYGYATY FFELVDSLPI DWQIRRLVMA  960
MKLTNFSRTI LLENKPLIVG EDLSEGEALV LEAYGWARNT GFGTLLNYRD RVVHDRRNVI  1020
LSEWRAKIGK LLMNGYTGGR MVLANFPKKV VEYLGNLSSE IKMEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	798	RRKRKR
2	793	799	RRKRKRK
3	794	799	RKRKRK
4	794	800	RRKRKRK
5	796	800	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	4e-44	NAC family protein