PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685601.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CPP

Protein Properties

Length: 1045aa MW: 114702 Da PI: 7.0966

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.4	1.8e-15	665	704	3	42
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +k+CnCk+skClk+YC+Cfaag +C+++C+C++C+N++e+ XP_020685601.1 665 QKRCNCKRSKCLKLYCDCFAAGMFCNKTCSCQGCSNNSEN 704 799*********************************9985 PP
2	TCR	50.4	4.4e-16	749	787	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++ag+ Cs C+Ce+C+N XP_020685601.1 749 RHKRGCNCKKSKCLKKYCECYQAGVGCSLGCRCEGCRNA 787 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence
MSSPHGFKPT PNTPSAKDSP TSIFFNNLSP IKVTSSRLSS QAFDNVDVPS PPPVFATPQN 60 RLINSKMWKR SENLAFPGSQ KICPGDADLV GTSLEYPDAT IQFIPVAAAQ LSNSSDKQYN 120 NDHHPQDEVC RGLSNGVDDF FSIPSEDCEN TSCSPGFFLG EADDLVRDKE ITPFSSNGDQ 180 MAFFNADSAQ FPAVKSAATV TNSVAEYTKH LNLVSTPNLQ PNKDALPQEF PKNSIAYEGS 240 NKEFLISNAG DSSNLNIVDQ SSSCQPEKDI SKKKPSNRTV PAAFEEIEKK GGLLGKKIEA 300 NLKSFVDLIS STQNEPITPD SNGSNHSGVP NNMNFKSICH VNEHPSTSSS CLLKMQDVNL 360 FSSRTDHLGK LGCIYEEKCE IPRNIQSHAN HLVIASQMRD ASGMSQIPYY QEDLTHHSRG 420 MYKRLQFEDV EKHEQSIADS ENYMKLKSPR FMSERTTMAS NMESQYPSTT NSSCRIQTTQ 480 SLSGNISCNY LVKTNSSEQS KGRFTAVAHR SSGIGLHLNA IGMPGKISGH IDMKMAMESL 540 GVEGKTCFHN TCEAPSQILK NMIVSRNGTG EVSLQLISNS EDSSFGSKDE CNNDRLQKSS 600 DSAPDYHSAL DVEPLDMRMQ PEFSDHHITP CSRKRQHYVE ASQSEDSAQT TLGRKRKKDP 660 EIEGQKRCNC KRSKCLKLYC DCFAAGMFCN KTCSCQGCSN NSENEEMVSS TRQLIETRNP 720 LAFAPKVVHA HGDLKENADN KHITPPSARH KRGCNCKKSK CLKKYCECYQ AGVGCSLGCR 780 CEGCRNAYGT KEAYGDISEI VVEHQKPKED SINGLPSVEA LKVVEGNSKE ASNTKQFTTH 840 FTSPAPLVQD TNINSVARLQ LPASYHPSSK SSFATLSSFE SPTSTMTDTR SSAHEEKNEQ 900 TLSLIPYNQK FDSSSGLNVD SLSPGWNISP SSVPSQSLCG STTLRTKQAK ALGEGKFIIK 960 PATDEPNYNL AEETPDILKD THSPINTVKT SSPNQKRVSP PKTVLHEAGS SFSPGLRSGR 1020 KYVLQSIPQF PSLTPYRNNM ENKDN

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence

MSSPHGFKPT PNTPSAKDSP TSIFFNNLSP IKVTSSRLSS QAFDNVDVPS PPPVFATPQN  60
RLINSKMWKR SENLAFPGSQ KICPGDADLV GTSLEYPDAT IQFIPVAAAQ LSNSSDKQYN  120
NDHHPQDEVC RGLSNGVDDF FSIPSEDCEN TSCSPGFFLG EADDLVRDKE ITPFSSNGDQ  180
MAFFNADSAQ FPAVKSAATV TNSVAEYTKH LNLVSTPNLQ PNKDALPQEF PKNSIAYEGS  240
NKEFLISNAG DSSNLNIVDQ SSSCQPEKDI SKKKPSNRTV PAAFEEIEKK GGLLGKKIEA  300
NLKSFVDLIS STQNEPITPD SNGSNHSGVP NNMNFKSICH VNEHPSTSSS CLLKMQDVNL  360
FSSRTDHLGK LGCIYEEKCE IPRNIQSHAN HLVIASQMRD ASGMSQIPYY QEDLTHHSRG  420
MYKRLQFEDV EKHEQSIADS ENYMKLKSPR FMSERTTMAS NMESQYPSTT NSSCRIQTTQ  480
SLSGNISCNY LVKTNSSEQS KGRFTAVAHR SSGIGLHLNA IGMPGKISGH IDMKMAMESL  540
GVEGKTCFHN TCEAPSQILK NMIVSRNGTG EVSLQLISNS EDSSFGSKDE CNNDRLQKSS  600
DSAPDYHSAL DVEPLDMRMQ PEFSDHHITP CSRKRQHYVE ASQSEDSAQT TLGRKRKKDP  660
EIEGQKRCNC KRSKCLKLYC DCFAAGMFCN KTCSCQGCSN NSENEEMVSS TRQLIETRNP  720
LAFAPKVVHA HGDLKENADN KHITPPSARH KRGCNCKKSK CLKKYCECYQ AGVGCSLGCR  780
CEGCRNAYGT KEAYGDISEI VVEHQKPKED SINGLPSVEA LKVVEGNSKE ASNTKQFTTH  840
FTSPAPLVQD TNINSVARLQ LPASYHPSSK SSFATLSSFE SPTSTMTDTR SSAHEEKNEQ  900
TLSLIPYNQK FDSSSGLNVD SLSPGWNISP SSVPSQSLCG STTLRTKQAK ALGEGKFIIK  960
PATDEPNYNL AEETPDILKD THSPINTVKT SSPNQKRVSP PKTVLHEAGS SFSPGLRSGR  1020
KYVLQSIPQF PSLTPYRNNM ENKDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	654	658	RKRKK
2	654	659	RKRKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-51	CPP family protein