PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685225.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 567aa    MW: 62522.9 Da    PI: 4.8711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.82e-1341955551374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAea+++++ + a+a+++++  l s++  +m+++  yf+eAL +r+++        l+p++++  +s+ +   +  f+e++P+lkf+h
  XP_020685225.1 195 LVHALVACAEAIQEENYKSADAIMKQITFLTSSQHGAMRKVGVYFAEALGRRIYS--------LHPKQDHYLDSAFSDILQMHFYETCPYLKFAH 281
                     689***************************************************9........89999986666666666666************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+i+qG+QWpaL+qaLa Rp+gpps+R+Tg++sp+s+++++l+++g +La++A++++v+fef+ lva++l+dle
  XP_020685225.1 282 FTANQAILEAFAGHRRVHVIDFGIKQGMQWPALMQALALRPGGPPSFRLTGIASPQSDNSDSLQKLGLKLAQLARTINVEFEFRGLVANSLADLE 376
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+v+p E++a+n+v++lh ll+ ++++e+    vL++v+sl+P++v+ veqea+hn+  Flerf+eal+yys+lfds++ +  + s e+  +
  XP_020685225.1 377 PYMLDVEP-EVIAINSVFELHGLLALPGAIEK----VLDTVRSLRPRIVTTVEQEANHNADGFLERFTEALHYYSTLFDSMDGGSDEGSPEKL-M 465
                     *****986.9**************99999999....***********************************************9766666665.5 PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++gr+i+nvvaceg+er+erhetle+W  r++ aGF++v+l+++a kqa++ll+ ++ +d+yr+ee++g+l+lgW++rpL+++SaWr
  XP_020685225.1 466 SEVFVGRQICNVVACEGFERTERHETLEQWMLRIRGAGFESVNLGSNAFKQASMLLALFGrGDEYRIEEKEGCLTLGWNNRPLIATSAWR 555
                     6666********************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    
MELMGNGGGR VNQEYPMGKR KTMAMEQDMD AGMDELLAEL GYKVRSSSMA DLAQKLELLD  60
RAMGNSSALD DIFLSHLASD SVHYNPSDMS RWVDNMLSEL DAPPSATFPS PSVVDLSPIN  120
VSSWLGYPAQ PSLSIQSDCG SDSHLGLESR EWKRIRTASS SADCSGGLIR PSEVVYSSAM  180
PMMMVESDHE AGIRLVHALV ACAEAIQEEN YKSADAIMKQ ITFLTSSQHG AMRKVGVYFA  240
EALGRRIYSL HPKQDHYLDS AFSDILQMHF YETCPYLKFA HFTANQAILE AFAGHRRVHV  300
IDFGIKQGMQ WPALMQALAL RPGGPPSFRL TGIASPQSDN SDSLQKLGLK LAQLARTINV  360
EFEFRGLVAN SLADLEPYML DVEPEVIAIN SVFELHGLLA LPGAIEKVLD TVRSLRPRIV  420
TTVEQEANHN ADGFLERFTE ALHYYSTLFD SMDGGSDEGS PEKLMSEVFV GRQICNVVAC  480
EGFERTERHE TLEQWMLRIR GAGFESVNLG SNAFKQASML LALFGRGDEY RIEEKEGCLT  540
LGWNNRPLIA TSAWRVAGAG DGVEAAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein