PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020685195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 27450.8 Da PI: 4.8916 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.2 | 7.4e-18 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P rikki++aded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ fdfl+d+v + XP_020685195.1 7 TRFPAPRIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKMYGAFDFLTDVVNK 86 579**************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MRKKLGTRFP APRIKKIMQA DEDIGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TLNSLHLKQC VKMYGAFDFL TDVVNKVPNL GGTESFGDEK GICRRRKTIE HDGDTTTDES 120 RFAKVAMTST NISPRGRGRG RGRSRGRPPL NRNLERESSL MKYEDEIDLS PEHEDPITDS 180 DATEKAKDNI TDFTNPASIL STEANPGEYS AWPLPDEVVK LGIEPSNLAN INLHLDEDED 240 YDNED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 145 | RGRGRGRGRSR |
2 | 137 | 147 | RGRGRGRGRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-52 | NF-YC family protein |