PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685195.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 245aa    MW: 27450.8 Da    PI: 4.8916
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.27.4e-187861998
           NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    +++P  rikki++aded+ +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+    fdfl+d+v +
  XP_020685195.1  7 TRFPAPRIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKMYGAFDFLTDVVNK 86
                    579**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MRKKLGTRFP APRIKKIMQA DEDIGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK  60
TLNSLHLKQC VKMYGAFDFL TDVVNKVPNL GGTESFGDEK GICRRRKTIE HDGDTTTDES  120
RFAKVAMTST NISPRGRGRG RGRSRGRPPL NRNLERESSL MKYEDEIDLS PEHEDPITDS  180
DATEKAKDNI TDFTNPASIL STEANPGEYS AWPLPDEVVK LGIEPSNLAN INLHLDEDED  240
YDNED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135145RGRGRGRGRSR
2137147RGRGRGRGRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-52NF-YC family protein