PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020685153.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 485aa MW: 52786.6 Da PI: 5.0424 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303.1 | 6.9e-93 | 104 | 474 | 1 | 373 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+++Aea++ +++ l + +Larl+el + +g++m+Rla +f++AL+ l++ e + ++s + ++ +aa +l++++sP++ XP_020685153.2 104 LIHLLTAAAEALAGdqKSHDLSKVILARLKELlpSPASGSSMERLAGHFAKALNCLLVD--GEAED--NCSGIE---TTAITAASQLLQDMSPYV 191 689********9872255669***********9555566*******************9..33333..333333...457778999********* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 +f+h+taNqaI+eav ge+rvHi+Dfdi++G+QW++Llqa+ s + ++pp +++iT+v + +++ +++++etg+ La fA+++g+pf+f + XP_020685153.2 192 NFGHFTANQAIVEAVGGERRVHIVDFDIMEGAQWAPLLQAFMSMKnGPPPsHVKITAVTAGRKSASTAVQETGRMLAAFAASIGLPFSFAQCRLD 286 ****************************************99655155669*********9999***************************9999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll.desvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleak 274 r ++++ +L+v +gEa++ n++l+ + + ++++s++ ++L + +++v+vve+e a +++ Fl +f+e l+ ys+l d+lea+ XP_020685153.2 287 RDGCFRPAALKVLRGEAIVFNCALHAPHHHhHSPASIR----SFLASAAEFGARLVTVVEEEgratAAVGKGGFLVGFMEELQRYSTLWDALEAG 377 **********************9876555404444455....5*******************6654455788*********************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLv 368 +p++s++r +vE+ ++g++i +v + ++ + e e W+e++ + F++v+ls +++ qaklll ++ +gyrveee + l+lgWk+r+Lv XP_020685153.2 378 FPKQSKAREMVENLVFGPRIAGAVEEAFRR--REDEVTECWSEWMAATDFQKVSLSFFNQWQAKLLLGLFN-EGYRVEEEaPNKLILGWKSRRLV 469 **********************99765554..556678*********************************.******77368889********* PP GRAS 369 svSaW 373 s+S+W XP_020685153.2 470 SASVW 474 ***** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence |
MDVAMANAAD LYYSGYNAAA TSNVGWLNWS PAIGWLSISP EEDIHDEKEA MAWQYSDDYA 60 LARSSPEMLD HWSSSNVSDM TLSSAEGTPA EEPLQLSSDK GIRLIHLLTA AAEALAGDQK 120 SHDLSKVILA RLKELLPSPA SGSSMERLAG HFAKALNCLL VDGEAEDNCS GIETTAITAA 180 SQLLQDMSPY VNFGHFTANQ AIVEAVGGER RVHIVDFDIM EGAQWAPLLQ AFMSMKNGPP 240 PSHVKITAVT AGRKSASTAV QETGRMLAAF AASIGLPFSF AQCRLDRDGC FRPAALKVLR 300 GEAIVFNCAL HAPHHHHHSP ASIRSFLASA AEFGARLVTV VEEEGRATAA VGKGGFLVGF 360 MEELQRYSTL WDALEAGFPK QSKAREMVEN LVFGPRIAGA VEEAFRRRED EVTECWSEWM 420 AATDFQKVSL SFFNQWQAKL LLGLFNEGYR VEEEAPNKLI LGWKSRRLVS ASVWSARPPP 480 AVADD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-113 | GRAS family protein |