PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020685110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27553.9 Da PI: 7.3862 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.9 | 8.2e-16 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+ r t+ kRr g+lKK +ELS+LC++ ++ +++s++ XP_020685110.1 11 ISNDATRRATLKKRRRGLLKKVNELSILCGVSACAVVYSPQT 52 9**************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MARKKVTLAY ISNDATRRAT LKKRRRGLLK KVNELSILCG VSACAVVYSP QTEQPEVFPS 60 VEEAKKILTD LSNMPEIDKN KKMVNQRSFL EQRLVKLSQQ VRRLEHENKE LSTAVCLRQC 120 LAGRSVHSLS KEEADDMLDL VDRKLKALQV RMHQLGPLML PPIMMEEIDV KVGGIGYEGV 180 EIEGMREYEW IAGNGGVGIG RGEEVMGGGG GSGVVGGEGA ELMEVLIERL SGSRSAWEES 240 LLPLPSPYY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVTLAYISNDATRRATLKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-31 | M-type_MADS family protein |