PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685092.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 295aa    MW: 32649.4 Da    PI: 5.1123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26120179258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     dDg++WrKYGqK++ ++++prsY+rCt++   gC++ k+v+rs++dp++ +itY geH++
  XP_020685092.1 120 DDGHTWRKYGQKDIFSAKYPRSYFRCTHKfdqGCKASKQVQRSEDDPSLYVITYFGEHTC 179
                     8***************************9999**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGSQDEEILS PPIWKSAAMK ELARGLDSVA KLASLLQAAS SENGRPEAAT AGLLAEEIMC  60
RISKAMAALE SGGNIPSSCV TGNKEGVGGK SKMQSTRKAG YRRSRGSPYS WTRITSNTID  120
DGHTWRKYGQ KDIFSAKYPR SYFRCTHKFD QGCKASKQVQ RSEDDPSLYV ITYFGEHTCV  180
DAKKATITPS RELCIISFES SNGENIKQET LTSFPSLNQE SEEEVLSNLT SADSASDYFV  240
SPKVDIKKSE EQTAAELGQE HNGLPLALYS SLMNYGMEFM DYEEFLNFDH DLFQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-28WRKY family protein