PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685078.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 558aa MW: 62182.3 Da PI: 8.404

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.1e-32	222	280	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ldDgynWrKYGqK+vkg+e+prsYY+Ct+++Cp+kk vers d++++ei+Y+g+H h+k XP_020685078.1 222 LDDGYNWRKYGQKKVKGTENPRSYYKCTYPNCPTKKMVERSL-DGHITEIIYKGTHSHPK 280 59**************************************.*************85 PP
2	WRKY	103.8	9.1e-33	386	444	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k++er+++d ++v++tYeg+Hnh+ XP_020685078.1 386 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTLGCSVRKHIERASTDLRAVITTYEGKHNHD 444 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MTPSSSSFVT SENSVPILPF STSSSSQLNT FLRASEAVGE ERSTFRSSNG FKSTVTTSSL 60 FPNASSSFSP PPFLSLPGGL SPAVFLNSPI PLSSSNAQIL ASEAIGSTFP TQTITWTGNN 120 TNYLHELKED RYHNKSYSNF SFETSTRPAS LKSSSFHPST IGFMASEEEA FEAANQQSWS 180 YQQPPLITSN DQIPNLQASS QSEYNCNYSN ISAQSLREQR RLDDGYNWRK YGQKKVKGTE 240 NPRSYYKCTY PNCPTKKMVE RSLDGHITEI IYKGTHSHPK PQRIRKNSSS FEGFQGSTHH 300 EGKDHSFNGQ FGSITTENSS AYYGDAHDIN MNSQRMRAVG PDYDDDEADA KKWKMEGEVE 360 GISISSDRTV REPKVMVQTT SDIDVLDDGY RWRKYGQKVV KGNPNPRSYY KCTTLGCSVR 420 KHIERASTDL RAVITTYEGK HNHDVPAPRG SGGLTNKTSF DDNNNIRTNN SSSSSSYNMS 480 NFTMAVRPSV ASNSFFSPRT NGMDGIGFFR YENSMNSLFA NELQKQNQLQ HLQKQGESVL 540 SKAKKEPRDD LFTDSLLG

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MTPSSSSFVT SENSVPILPF STSSSSQLNT FLRASEAVGE ERSTFRSSNG FKSTVTTSSL  60
FPNASSSFSP PPFLSLPGGL SPAVFLNSPI PLSSSNAQIL ASEAIGSTFP TQTITWTGNN  120
TNYLHELKED RYHNKSYSNF SFETSTRPAS LKSSSFHPST IGFMASEEEA FEAANQQSWS  180
YQQPPLITSN DQIPNLQASS QSEYNCNYSN ISAQSLREQR RLDDGYNWRK YGQKKVKGTE  240
NPRSYYKCTY PNCPTKKMVE RSLDGHITEI IYKGTHSHPK PQRIRKNSSS FEGFQGSTHH  300
EGKDHSFNGQ FGSITTENSS AYYGDAHDIN MNSQRMRAVG PDYDDDEADA KKWKMEGEVE  360
GISISSDRTV REPKVMVQTT SDIDVLDDGY RWRKYGQKVV KGNPNPRSYY KCTTLGCSVR  420
KHIERASTDL RAVITTYEGK HNHDVPAPRG SGGLTNKTSF DDNNNIRTNN SSSSSSYNMS  480
NFTMAVRPSV ASNSFFSPRT NGMDGIGFFR YENSMNSLFA NELQKQNQLQ HLQKQGESVL  540
SKAKKEPRDD LFTDSLLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-99	WRKY family protein